Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq148 127 2e-24 seq1035 123 2e-23 >seq148 Length=18536 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || ||||| || || |||||| | || || || | | Sbjct 18294 GATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATTACGTTGGACGTCGAGCCTTC 18353 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 18354 AGACTCGATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCA 18413 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || || ||||| ||||| | | | | || || || || Sbjct 18414 GCAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAA 18473 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || | ||||||||| | || ||||| || || Sbjct 18474 CATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCGCTTGCGTGGTGG 18521 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||| | ||||| || || ||||| ||||| || || | | Sbjct 321 GATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACTCTCGACGTCGAGCCTTC 262 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 261 GGACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCA 202 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||| || || || || ||||| ||||| | | | | || || || || Sbjct 201 GCAGCGATTGATTTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAA 142 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||| || ||||| || || | ||||||||| Sbjct 141 CATCCAGAAGGAGTCTACGTTGCACTTGGTG 111 >seq1035 Length=208423 Score = 123 bits (136), Expect = 2e-23 Identities = 176/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA- 24761 ||||||||||||| | || || || || || || || || |||||||| || | ||||| Sbjct 98575 GATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCG-AGCCAT 98517 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | |||| | || | || || || |||||||| ||||| |||||||| || || || | Sbjct 98516 CGGACAGCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCAGACC 98457 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || ||| ||||||| ||||| || ||||| |||||| | | | || || || | Sbjct 98456 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACA 98397 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGC 24941 |||| || ||||| ||||| | ||||||||| | || | || || || | | || | Sbjct 98396 ACATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGTGGTGCCATCGAAC 98337 Query 24942 CAACG 24946 ||||| Sbjct 98336 CAACG 98332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449891734460040