Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq294 241 2e-57 seq549 194 3e-43 seq702 158 2e-32 seq393 105 1e-16 seq158 86.0 1e-10 >seq294 Length=213801 Score = 241 bits (266), Expect = 2e-57 Identities = 347/482 (72%), Gaps = 8/482 (2%) Strand=Plus/Plus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGT-GCTCGACGACATCGTGGGCAACGAGC-ACG 2018973 |||||| | || |||||||| ||| ||| ||||| ||| ||||||||||| ||| || Sbjct 20427 CCGTGGGTGGAGAAGTACCGTCCG-CAGACGCTCGCCGATGTCGTGGGCAAC-AGCGACA 20484 Query 2018974 CCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGG 2019033 || | | || || ||| |||| ||||||||||||| |||||||| | | ||| Sbjct 20485 CCATCGACTCGCTGCGGGCCATGGCGCGCGACGGCAACATGACCAACCTCATCATCTCGG 20544 Query 2019034 GCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCG 2019093 ||||||| |||||||||||||||||| |||| || || || |||| | | | ||| Sbjct 20545 GCCCGCCAGGCACGGGCAAGACCACGTCCATCCTCTGTCTCGCCCGCGAGTTGCTCGGCA 20604 Query 2019094 CGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCG 2019153 || | | |||| |||||||| ||||| || || ||||| |||||| | ||| | Sbjct 20605 CGAGCATGAAGCAGGCAGTGCTCGAGCTCAACGCCTCCGACGACCGCGGCATCGACACGG 20664 Query 2019154 TGCGTAGAATCATCAAGCA--TCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCA 2019211 |||| | | |||||| || ||| | ||| | || ||||| || || ||||| Sbjct 20665 TGCGCACCAAGATCAAGATGTTCGCGCAGCAAAAGGTGACG--CTGCCCCCTGGACGCCA 20722 Query 2019212 CAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCG 2019271 ||| | | |||||||| || || ||| || | ||| |||||||||||||||| || || Sbjct 20723 TAAGATCGTGATCCTCGACGAAGCTGACAGCATGACGGCGGCGGCCCAGCAGGCGCTGCG 20782 Query 2019272 ATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTC 2019331 ||| ||||| | | | | ||| |||||||| |||||||| || |||| ||| | Sbjct 20783 TCGGACGATGGAGATCTTCTCGTCCACCACGCGGTTCGCGCTGGCGTGTAACAACTCGAC 20842 Query 2019332 GATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGA 2019391 | | ||||||| | ||||||| || ||||||||||||||||| |||| |||| || Sbjct 20843 CAAGATCATCGAGCCGATCCAGAGTCGCTGCGCCATCTTGCGCTTCACGCGACTCAAGGA 20902 Query 2019392 CG 2019393 || Sbjct 20903 CG 20904 >seq549 Length=149600 Score = 194 bits (214), Expect = 3e-43 Identities = 240/328 (73%), Gaps = 3/328 (1%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||| || |||||||| | ||||| |||| |||||| |||||||| || ||||| Sbjct 88181 ACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCACGCTT 88122 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| |||| | ||||| |||||||| ||||| ||||| | ||| || || Sbjct 88121 CTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCAATGGCAGCGAA 88062 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | |||||| ||||| ||||| | | | | |||| || ||| | |||||| Sbjct 88061 GGCGACGACACGCTCAGCAAACGCGGC---GTTCTCTGAGTCACACCAGCGGAGCGCCCA 88005 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 | ||||| ||| ||| | || | || || |||||||| || | ||||| |||||| Sbjct 88004 GTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTTCTTCTC 87945 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | | ||||||| ||| ||||| || | |||||||| | || ||||||||||| || Sbjct 87944 GGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGAGTGGATGTTCTC 87885 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||| ||||||||||| || |||||| Sbjct 87884 AATGGCAATCTGGAAGCCGTAGAAGCAG 87857 Score = 183 bits (202), Expect = 5e-40 Identities = 244/332 (73%), Gaps = 14/332 (4%) Strand=Plus/Minus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| |||||||||| || || || || ||| |||||| |||||||||||||||| ||| Sbjct 88502 GACACCCGCCTTGGAGTATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAG 88443 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCG-CACCC-G 794009 |||||||| |||||||| || ||||||| || |||| |||| | |||| | Sbjct 88442 CGAGATCATATCCATCCAGTCAAATGGGTTGGACGCGTTGTAGATCTTCGAGACACCAAG 88383 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 |||| | || || || || |||||||| || ||||||||||||||||| || | |||| Sbjct 88382 AGCGTGG--AGAAGACGATCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTC 88325 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 || ||||| ||| | || || ||||| || |||| ||||| ||||||||| |||||| Sbjct 88324 ATACCGATAAGCTCGACTGGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCA 88265 Query 794130 TCGATGATGATCTGCCTGG----GC-ACGTCGGACGACGGCTTGTCGACGAGCATCGTGT 794184 || ||| |||| | ||| || || || |||| || || ||| | ||| Sbjct 88264 TCACTGACAATCT-CGTGGATTCGCGACTCTGGGAGACG----GTTAACAAGCTTGTTGT 88210 Query 794185 AGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216 |||||| |||||| ||||| || || |||||| Sbjct 88209 AGAGCAAGCAGGCGAAGTCACAGTGGAGACCT 88178 Score = 138 bits (152), Expect = 2e-26 Identities = 198/278 (71%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 796141 AAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCC 796200 || || | ||| || || || ||||| || || ||||| ||| |||||||| | Sbjct 87862 AAGCAGCGGGCTTCAGGCACCTGGACTTCGTTGCTGAAGTTCATGGCAAGGTTCTCGTTC 87803 Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 || || || || ||||| ||||| || ||||| ||||||||||| ||||||||||| | | Sbjct 87802 ACAATACCATCACTGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTG 87743 Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGC---CGAGGTCGACCTCCTCGGCGGTC 796317 ||| | | | ||||| || || | || | || |||| ||||||| | ||| Sbjct 87742 TCGGTCAAGTTGCTCCAGT---CCTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTC 87686 Query 796318 CAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAAC 796377 || ||| ||| || ||||| |||||||| ||||| ||| | | |||| ||||| Sbjct 87685 CAGAAGCTGGCTTCCGCCTTCTTGTACATATCCCAGATCTCCTTCTCCTGGATCGGGAAG 87626 Query 796378 AGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || || || || || ||||||||||| ||||| ||||| Sbjct 87625 AGCACGAATCGGTTTGGGTTCTCGCGAAGCAGAGGCTC 87588 >seq702 Length=166584 Score = 158 bits (174), Expect = 2e-32 Identities = 192/259 (74%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||||||||| || |||||||||||| |||||| || || | | Sbjct 111151 TGTACTTGGTCACGGCCTTGGTACCTTCCGAGACGGCGTGCTTGGCCAACTCACCAGGGA 111210 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG-TGCC--GATCGTGTTGCGCTTGTTAG 1485586 || || ||||||||||||||||| ||||||| | | | ||| || |||||| Sbjct 111211 GCATGAGACGCACGGCGGTCTGGATTTCGCGGGACGACAAGGTCGACTT---CTTGTTGT 111267 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||| || ||||||||| | | | ||||| |||| |||||||||| ||||||| Sbjct 111268 AACGCGAGAGCTTGCCGGCCTCCGAGGCAATGCGCTCGAAAATGTCGTTGATGAACGAGT 111327 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||||||||| |||||||| || || ||||||||||| | ||||| Sbjct 111328 TCATGATCGACATACCGCGCTTGGAGATACCGGTCTCCGGGTGCACCTGACGCAACACCT 111387 Query 1485707 TGTAAACAAAGGACGAGTA 1485725 |||| | ||| |||||| Sbjct 111388 TGTAGATGTAGGTCGAGTA 111406 Score = 149 bits (164), Expect = 1e-29 Identities = 190/259 (73%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||||||||| || |||||||| ||| |||||| || || | | Sbjct 3529 TGTACTTGGTAACGGCCTTGGTACCTTCCGAGACGGCATGCTTGGCCAACTCACCAGGGA 3588 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG-TGCC--GATCGTGTTGCGCTTGTTAG 1485586 || || ||||| ||||||||||| ||||||| | | | ||| || |||||| Sbjct 3589 GCATGAGACGCACAGCGGTCTGGATTTCGCGGGACGACAAGGTCGACTT---CTTGTTGT 3645 Query 1485587 TGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||| || ||||||||| | | | ||||| |||| |||||||||| ||||||| Sbjct 3646 AACGCGAGAGCTTGCCGGCCTCCGAGGCAATGCGCTCGAAAATGTCGTTGATGAACGAGT 3705 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||||||||| |||||||| || || ||||||||||| | ||||| Sbjct 3706 TCATGATCGACATACCGCGCTTGGAGATACCGGTCTCAGGGTGCACCTGACGCAACACCT 3765 Query 1485707 TGTAAACAAAGGACGAGTA 1485725 |||| | ||| |||||| Sbjct 3766 TGTAGATGTAGGTCGAGTA 3784 >seq393 Length=25462 Score = 105 bits (116), Expect = 1e-16 Identities = 294/443 (66%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 118599 GTGACCGTGTTTGACCCGTTCTTGCGCACGCCGCGCATGCACACGCACATGTGGAGGCCC 118658 ||||| ||| | | ||| |||| || || |||||| || ||||||||| | || Sbjct 16251 GTGACGGTGCTCGCACCGCTCTTCTCGACACCACGCATGACCATGCACATGTGCGTGGCC 16310 Query 118659 TCGAGCACGACGCCGACGCCGCGCGCGCCCG-TGACCTCGCTGAT-GCTCTCGGCGATCT 118716 |||| ||| ||| | ||||| | | || | | || | |||| || ||| | |||| Sbjct 16311 TCGATCACCACGGCCACGCC-CTTGGGCTGGATTACGCCCATGATCGCGTTCG-CAATCT 16368 Query 118717 GGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTCCGAGAGCATGTCGACGATGCGCGGGA 118776 | || || |||||| || || || || ||| | || || |||||||| || Sbjct 16369 GCTTGGTCAGGCGCTCCTGTACTTGCAATCGACGCGAAAACACCTCCGAGATGCGCGCGA 16428 Query 118777 TCTTGCTCAGGCCGATGATCCTGCCCGCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAA 118836 |||||||| || | | |||| || | ||| || | |||| ||||||| | | Sbjct 16429 GCTTGCTCAAACCCAGCACTTTGCCGTTTGGAATGTACCCAATGTGCACCTTGCCCGTGA 16488 Query 118837 AGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTCGCGCACGGTCACCATCT 118896 |||||| || || ||||||||||||||| | | |||||||||||||||| | ||||| | Sbjct 16489 AGGGCACCATGTGATGCTCGCACATGGAGTAGAGGTCAATGTCGCGCACGATGACCATTT 16548 Query 118897 CGCCCGACGTC-TCGGCAAAGAGGGCGTCGCCGACGGCCTCGGCCAGGGTCAGGCGGTGG 118955 || || ||| || |||| | || ||| | |||| ||||| || | | | Sbjct 16549 CG-TCGTGGTCTTCTTCAAACACCGCCTCGTTCAACACCTCCTCCAGGCTCTGCGCATAG 16607 Query 118956 CCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATGGGCGTGTCCAAGAGGCCCTCG 119015 || ||| || || |||||||||| ||| ||| || | ||| || |||||| Sbjct 16608 CCCTTGGTGTTGAACAGCAGCGCCTTGGCCATACGCTCGGGTGTCTTCAACAGACCCTCG 16667 Query 119016 CGCGCCACGTCCTCGCCCAGACA 119038 ||| | |||||||| | ||| Sbjct 16668 CGCTCTGGATCCTCGCCAATACA 16690 >seq158 Length=104538 Score = 86.0 bits (94), Expect = 1e-10 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1703794 TACAACGGATGCCATGGATGGCGCCGCCGCTTACGACCACCTCGACGTCGTCAAGTGGCT 1703853 ||||||||| |||||||||||||| || ||| | | || |||| |||||||||| || Sbjct 23947 TACAACGGAGGCCATGGATGGCGCTGCTGCTAATGGGCATTTCGATGTCGTCAAGTTTCT 24006 Query 1703854 CCACGAGAATCGCACCGAGGGATGCGCGACTGCCGCCATGGA 1703895 ||||| || || || || |||||| |||| || || ||||| Sbjct 24007 TCACGACAACCGGACAGAAGGATGCACGACGGCAGCAATGGA 24048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916135451332877