Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq148 105 5e-18 seq135 87.8 1e-12 seq50 84.2 2e-11 >seq148 Length=18536 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || || || || || ||||| |||||||| |||| ||| || Sbjct 323 AAGATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACTCTCGACGTCGAGCCT 264 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || | ||| | | || || || ||||| || || |||||| | || ||| Sbjct 263 TCGGACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCAGAT 204 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| || | |||| || || || ||||| ||||||| | || | |||||||| Sbjct 203 CAGCAGCGATTGATTTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTAC 144 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||||||||||||| ||||| Sbjct 143 AACATCCAGAAGGAGTCTACGTTGCACTTGGTG 111 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || ||||| || | || ||||| |||||||| | || ||| || Sbjct 18292 AAGATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATTACGTTGGACGTCGAGCCT 18351 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || | ||| | | || || || ||||| || || ||||| | || ||| Sbjct 18352 TCAGACTCGATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGAT 18411 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | | || | ||| ||||| ||||| ||||||| | || | |||||||| Sbjct 18412 CAGCAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTAC 18471 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || |||||||||||||||||| ||||| | | ||||| || || Sbjct 18472 AACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCGCTTGCGTGGTGG 18521 >seq135 Length=10251 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||| || | |||| || || || ||||| ||||||| | || | ||||| Sbjct 10248 GATCAGCAGCGATTGATTTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGAC 10189 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 |||||||| || |||||||||||||||||| ||||| || | | || || ||||| Sbjct 10188 TACAACATCCAGAAGGAGTCTACGTTGCACTTGGTGCTGCGCCTTCGTGGCGGAAA 10133 >seq50 Length=3935 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||| || | |||| || || || ||||| ||||||| | || | ||||| Sbjct 4 GATCAGCAGCGATTGATTTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGAC 63 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||| || |||||||||||||||||| ||||| Sbjct 64 TACAACATCCAGAAGGAGTCTACGTTGCACTTGGTG 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398871729652627