Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq148 138 1e-27 seq1035 136 4e-27 >seq148 Length=18536 Score = 138 bits (152), Expect = 1e-27 Identities = 151/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | | | | ||| ||||||||||||||||| Sbjct 124 GTAGACTCCTTCTGGATGTTGTAGTC--CGAGAGGGTACGGCCGTCCTCGAGCTGCTTGC 181 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| | |||||||| || ||||| |||||||||||||| |||||| |||| Sbjct 182 CAGCGAAAATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTCTGCT 241 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || ||| | ||||| ||||||| || | ||| |||||||||| | Sbjct 242 TGACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAGAGTAATGGTCTTGCCGGTCAACG 301 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 302 TCTTCACGAAGATCTGCAT 320 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | | | | ||| ||||||||||||||| | Sbjct 18491 GTAGACTCCTTCTGGATGTTGTAGTC--CGAGAGGGTACGGCCGTCCTCGAGCTGCTTAC 18434 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | |||||||| || ||||| || ||||||||||| |||||| |||| Sbjct 18433 CAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCT 18374 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | || ||| | ||||| ||||| | || | ||| |||||||| || | Sbjct 18373 TGACATTGTCGATCGAGTCTGAAGGCTCGACGTCCAACGTAATGGTCTTGCCGGTGAGTG 18314 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 18313 TCTTGACGAAGATCTGCAT 18295 >seq1035 Length=208423 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| || | |||| | | | |||||||| Sbjct 98369 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCA-TCCTCGAG 98427 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || ||||||||||| || || || ||||||||||| ||| Sbjct 98428 CTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGGAT 98487 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||||| | |||| |||| | ||||| || |||| |||| ||| ||||| Sbjct 98488 CTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGCGTGATGGTCTTGCC 98547 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| || || || |||||||| Sbjct 98548 CGTCAGAGTCTTCACAAAGATCTGCAT 98574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414497401320