Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq148 104 2e-17 seq1035 96.9 2e-15 >seq148 Length=18536 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||| || | |||||| || | || ||| || || |||||||| || || Sbjct 18522 ACCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGA 18463 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | || || || ||||| |||||||||||||||||| | || Sbjct 18462 GAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGG 18403 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || ||||| || |||| ||| | | ||| | || | Sbjct 18402 AATACCTTCCTTGTCCTGGATCTTCTGCTT-GACATTGTCGATCGAGTCTGAAGGCTCGA 18344 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| | ||| || || || || || | || || || ||||||||||| Sbjct 18343 CGTCCAACGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 18295 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | |||||| || | || ||| || || |||||||| || || Sbjct 93 ACCACCACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGA 152 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | || || || || |||||||| |||||||||||| | || Sbjct 153 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCTGGAGG 212 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || ||||| || || | ||| | | ||| | || | Sbjct 213 AATGCCTTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCGATCGAGTCCGAAGGCTCGA 271 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| | || || || || || || ||||| || || ||||||||||| Sbjct 272 CGTCGAGAGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCAT 320 >seq1035 Length=208423 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | |||||| || | || ||| || || |||||||| || | Sbjct 98346 CACCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCG 98405 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| ||||| | || || | || || ||||| || |||| ||||||||| ||| | | Sbjct 98406 AGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTG 98465 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGG-TGTCGCTTGATTCC 33699 | | ||||| ||||| || ||||| || | | | |||| | |||| || || Sbjct 98466 GAATTCCTTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCAATGCTGTCCGATGGCTCG 98524 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||| || || || || | || || |||||||||||||| Sbjct 98525 ACATCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCAT 98574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328699821658560