Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq549 307 2e-77 seq294 190 3e-42 seq702 118 2e-20 seq393 113 6e-19 seq1043 98.7 1e-14 >seq549 Length=149600 Score = 307 bits (340), Expect = 2e-77 Identities = 435/602 (72%), Gaps = 16/602 (3%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| ||||| ||||| ||||| ||||| || || || ||||| |||| | || | Sbjct 87588 GAGCCTCTGCTTCGCGAGAACCCAAACCGATTCGTGCTCTTCCCGATCCAGGAGAAGGAG 87647 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| |||||| || ||||| || ||| ||| ||||| | ||||||| |||| || Sbjct 87648 ATCTGGGATATGTAC-AAGAAGGCGGAAGCCAGCTTCTGGACGGTCGAGGAGATCGATCT 87706 Query 1455836 CGGCGCCGAC---ACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAA 1455892 | |||| | || ||||| ||| |||| | ||||| || |||||||| Sbjct 87707 TGTGCACGACCTCAAGG---ACTGGAGCAACTTGACCGACAATGAGCGTCACTTCATCAA 87763 Query 1455893 GCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCC 1455952 |||||| ||||| || || ||| ||||| ||||| || ||| ||||||||| ||| Sbjct 87764 GCACGTGCTCGCGTTCTT-CGCTGCCAGTGATGGTATTGTGAACGAGAACCTTGCCATGA 87822 Query 1455953 GCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCA 1456012 ||| | || || ||||| |||| || || || | || ||||| |||||||| |||| Sbjct 87823 ACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGCTTCTACGGCTTCCAGATTGCCA 87882 Query 1456013 TCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGG 1456072 | || ||||||||||| |||| |||||||| |||| ||||| ||| ||||||| | | Sbjct 87883 TTGAGAACATCCACTCGGAAATGTACTCGCTGTTGATTGACACGTACATCAAGGATGCCG 87942 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 ||||||| ||||| | || |||||||| || || | || | ||| ||| |||||| Sbjct 87943 CCGAGAAGAACCACTTGTTCCGCGCCATTGAGACAATCCCATGCGTGCAGAAGAAGGCCA 88002 Query 1456133 ACTGGGCGATGAAGTGG-ATCA-ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 |||||||| | ||| | | || || ||| || ||||| ||||| ||||| Sbjct 88003 ACTGGGCGCTCCGCTGGTGTGACTCAGAGAACGCCGCG----TTTGCTGAGCGTGTCGTC 88058 Query 1456191 GGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | ||| || | | | ||||| ||||| |||||||| |||||| | |||| |||||| Sbjct 88059 GCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTTCTGCTCGGTCTTCTGGCTC 88118 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||||| || |||||||| || | || |||| ||||| |||||||||| || || Sbjct 88119 AAGAAGCGTGGTCTCATGCCTGG-CCTCAGCTTCTCGAACGAGCTTATCAGTCGTGATGA 88177 Query 1456310 AG 1456311 || Sbjct 88178 AG 88179 Score = 159 bits (176), Expect = 5e-33 Identities = 238/332 (72%), Gaps = 12/332 (4%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506 |||| | ||||||||||| ||||| ||||||||| | ||| || ||| |||| | Sbjct 88178 AGGTCTCCACTGTGACTTCGCCTGCTTGCTCTACAACAAGCTTGTTAAC----CGTCTCC 88233 Query 1456507 CGACGTGCCCAAGC----AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCA 1456562 | || | || | |||| || || |||||| ||||||||| ||||| |||| Sbjct 88234 CAGAGTCGCGAATCCACGAGATTGTCAGTGATGCCGTCACGATCGAGAAGGAGTTCGTCA 88293 Query 1456563 GCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATT 1456622 || ||||| || || | ||| ||||| |||||| | | |||||||||||||||||| Sbjct 88294 AGGACTCGCTCCCAGTCGAGCTTATCGGTATGAACTCGGC-GCTCATGTGCCAGTACATC 88352 Query 1456623 GAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGG 1456682 || || ||||| || || || ||| || || || || |||| |||| || Sbjct 88353 GAGTTC-GTCGCTGATCGTCTTCTCCACGCTCTTGG-TGTCTCGAAGATCTACAACGCGT 88410 Query 1456683 CCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGC 1456742 ||||||| || |||||||| ||||||||||| |||||||||||||||| |||||| Sbjct 88411 CCAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGA 88470 Query 1456743 GCCGCG-TGGCGAGTACGCCAAGGCCGGCGTC 1456773 || | ||| || ||| ||||||| || ||| Sbjct 88471 AGCGTGTTGGTGAATACTCCAAGGCGGGTGTC 88502 >seq294 Length=213801 Score = 190 bits (210), Expect = 3e-42 Identities = 331/479 (69%), Gaps = 2/479 (0%) Strand=Plus/Minus Query 332856 CGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCA 332915 |||| |||| ||| ||||||| |||||| || || ||||| | | |||||||| | Sbjct 20904 CGTCCTTGAGTCGCGTGAAGCGCAAGATGGCGCAGCGACTCTGGATCGGCTCGATGATCT 20845 Query 332916 TTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCG 332975 | | ||| |||| || ||||| || |||||||| || | | ||||| ||| Sbjct 20844 TGGTCGAGTTGTTACACGCCAGCGCGAACCGCGTGGTGGACGAGAAGATCTCCATCGTCC 20785 Query 332976 ACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCT 333035 || || ||||| |||||||||| ||| | || ||| || ||||||||||| | ||||| Sbjct 20784 GACGCAGCGCCTGCTGGGCCGCCGCCGTCATGCTGTCAGCTTCGTCGAGGATCACGATCT 20725 Query 333036 TGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCA 333095 | ||||| || | ||||| ||| ||| | ||| ||||| | |||||| Sbjct 20724 TATGGCGTCCAGGGGGCAGCGTCACCTTTTGCTGCGCGAACATCTTGATCTTGGTGCGCA 20665 Query 333096 CGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCG 333155 | ||| | |||||| ||||| || |||||||| |||||||| |||| | | || Sbjct 20664 CCGTGTCGATGCCGCGGTCGTCGGAGGCGTTGAGCTCGAGCACTGCCTGCTTCATGCTCG 20605 Query 333156 CACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGAC 333215 || | | |||| || || || |||| |||||||||||||||||| ||||| | Sbjct 20604 TGCCGAGCAACTCGCGGGCGAGACAGAGGATGGACGTGGTCTTGCCCGTGCCTGGCGGGC 20545 Query 333216 CCGCCAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGG 333275 ||| | | |||||||| ||||||||||||| |||| ||| || || | | || Sbjct 20544 CCGAGATGATGAGGTTGGTCATGTTGCCGTCGCGCGCCATGGCCCGCAGCGAGTCGATGG 20485 Query 333276 CGT-GCTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGG 333333 || ||| |||||| || | ||| ||||| | || |||||||| || | ||| || Sbjct 20484 TGTCGCT-GTTGCCCACGACATCGGCGAGCGTCTGCGGACGGTACTTCTCCACCCACGG 20427 >seq702 Length=166584 Score = 118 bits (130), Expect = 2e-20 Identities = 177/247 (72%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||||||||| | ||||||||||| |||| | ||| Sbjct 111406 TACTCGACCTACATCTACAAGGTGTTGCGTCAGGTGCACCCGGAGACCGGT-----ATC- 111353 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||| |||||||||||||||||||| |||||||||| |||| ||||| | | Sbjct 111352 TCCAAGCGCGGTATGTCGATCATGAACTCGTTCATCAACGACATTTTCGAGCGCATTGCC 111293 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGA--TCGGC-ACGCGCGAG 725075 | |||||||| || |||| | ||||||| || ||| | | | | ||||| Sbjct 111292 TCGGAGGCCGGCAAGCTCTCGCGTTACAACAAG---AAGTCGACCTTGTCGTCCCGCGAA 111236 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||||||||||| || || | | || || |||||| |||||||||||| || Sbjct 111235 ATCCAGACCGCCGTGCGTCTCATGCTCCCTGGTGAGTTGGCCAAGCACGCCGTCTCGGAA 111176 Query 725136 GGCACCA 725142 || |||| Sbjct 111175 GGTACCA 111169 Score = 109 bits (120), Expect = 8e-18 Identities = 175/247 (71%), Gaps = 12/247 (5%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 |||||| ||| |||||||||||| | ||||||||||| |||| | ||| Sbjct 3784 TACTCGACCTACATCTACAAGGTGTTGCGTCAGGTGCACCCTGAGACCGGT-----ATC- 3731 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||| |||||||||||||||||||| |||||||||| |||| ||||| | | Sbjct 3730 TCCAAGCGCGGTATGTCGATCATGAACTCGTTCATCAACGACATTTTCGAGCGCATTGCC 3671 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGA--TCGGC-ACGCGCGAG 725075 | |||||||| || |||| | ||||||| || ||| | | | | ||||| Sbjct 3670 TCGGAGGCCGGCAAGCTCTCGCGTTACAACAAG---AAGTCGACCTTGTCGTCCCGCGAA 3614 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||||| ||||| || || | | || || |||||| ||| |||||||| || Sbjct 3613 ATCCAGACCGCTGTGCGTCTCATGCTCCCTGGTGAGTTGGCCAAGCATGCCGTCTCGGAA 3554 Query 725136 GGCACCA 725142 || |||| Sbjct 3553 GGTACCA 3547 >seq393 Length=25462 Score = 113 bits (124), Expect = 6e-19 Identities = 209/304 (69%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 2133426 GGCGAGGATGTGACGCGCGAGGGCCTCCTGGACACACCCATGCGCGTGGCCAAGGCCATG 2133485 ||||||||| ||||||||| || || | |||||| ||| |||||||||| || Sbjct 16684 GGCGAGGATCCAGAGCGCGAGGGTCTGTTGAAGACACCCGAGCGTATGGCCAAGGCGCTG 16625 Query 2133486 GTGGAGCGCACGCGCGGCCAT-CGCATGACCCTGGCCGACGCCGTCGGCGGCGCCCTCTT 2133544 || ||| ||| || |||| || ||||| || | | || || | || Sbjct 16624 CTGTTCAACACCAAGGGCTATGCGCA-GAGCCTGGAGGAGGTGTTGAACGAGGCGGTGTT 16566 Query 2133545 TGACGAGGCGTCGGACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGA 2133604 ||| || | ||||| ||||| | |||||||| |||||| | | |||||||||||| Sbjct 16565 TGAAGAAGACCACGACGAAATGGTCATCGTGCGCGACATTGACCTCTACTCCATGTGCGA 16506 Query 2133605 GCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCCGCGGGCAAGAT 2133664 ||| ||| || ||||||| | ||||||| ||| | || ||| | || ||||| | Sbjct 16505 GCATCACATGGTGCCCTTCACGGGCAAGGTGCACATTGGGTACATTCCAAACGGCAAAGT 16446 Query 2133665 CATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACA 2133724 | ||| |||||||| || |||||||| || ||||||| || || |||||||| Sbjct 16445 GCTGGGTTTGAGCAAGCTCGCGCGCATCTCGGAGGTGTTTTCGCGTCGATTGCAAGTACA 16386 Query 2133725 GGAG 2133728 |||| Sbjct 16385 GGAG 16382 >seq1043 Length=29265 Score = 98.7 bits (108), Expect = 1e-14 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 17671 GCCATGGACAAGGCGGCTGCTGCGGGCCACCTCGATGTGGTGCGCTTTCTCGACGAGCAC 17730 ||||||||| ||| || | ||| ||||||||||| ||||| | ||| |||| || Sbjct 1231 GCCATGGACGTGGCAGCGTCGATGGGTCACCTCGATGTTGTGCGATACCTCCACGAAAAC 1290 Query 17731 CGTGACGAAGGCTGCACCGAGTTTGCCATGACCAAAGCCGCCATCCACGGTCATCTTGAC 17790 || | ||||||||||| ||| ||||||| | | || || |||| |||||||| ||| Sbjct 1291 CGCCAGGAAGGCTGCACAACGTTCGCCATGAACTACGCAGCAATCCGAGGTCATCTGGAC 1350 Query 17791 GTCGTCGCCTACTTGCACGAGCACCGAACAGAGGCATGCACAGA 17834 || || ||| | || ||| ||||||| || | |||||| || Sbjct 1351 GTGGTGCGCTATCTCCATGAGAACCGAACGGAAGGATGCACGGA 1394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177710600732966