Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq148 125 6e-24 seq1035 113 4e-20 seq50 84.2 2e-11 >seq148 Length=18536 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | | |||||| || |||||| |||||| || |||||||| || | Sbjct 18521 CCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAG 18462 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || ||||||||||| ||||| ||||| |||||||| || | |||| Sbjct 18461 AGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGGA 18402 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| |||||| ||||| | | | | | || ||| | || || Sbjct 18401 ATACCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCGATCGAGTCTGAAGGCTCGACG 18342 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || || | || || || || |||||||| Sbjct 18341 TCCAACGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 18295 >seq1035 Length=208423 Score = 113 bits (124), Expect = 4e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || || || |||||| || |||||||| || | Sbjct 98348 CCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 98407 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || |||||||| || || || |||| ||||||||||| | ||| Sbjct 98408 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGA 98467 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGAT---TC 35685 | | ||||||||| |||||| ||||| | |||| || | |||| |||| || Sbjct 98468 ATTCCTTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCAATGCTGTC---CGATGGCTC 98523 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | |||||| || || ||||||| ||| |||||||| |||||||| Sbjct 98524 GACATCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCAT 98574 >seq50 Length=3935 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 ||||||||||| | | | |||||| || |||||| |||||| || |||||||| || Sbjct 119 TTTCCACCACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCC 60 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 | | ||| || |||| || |||||||| || || || ||||| |||||||| || Sbjct 59 GAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450787722778440