Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq549 120 4e-22 >seq549 Length=149600 Score = 120 bits (132), Expect = 4e-22 Identities = 371/566 (66%), Gaps = 15/566 (3%) Strand=Plus/Minus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||||||||||||||| || || || ||||| | ||| || | ||||| || || || Sbjct 88204 AAGCAGGCGAAGTCACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTG 88145 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAA 39732 || |||||||| ||||||||||| |||||||| || | | |||| || || || || || Sbjct 88144 AGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCG-AGCAGAACGAACCCGAGAA 88086 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATG 39792 |||||| || || | || || || || || | | | ||| | || | | || | Sbjct 88085 GAAGATACCCTCAATGGCAGCGAAGGCGAC--GACACGCTCAGCAA-ACGCGGCGTTCTC 88029 Query 39793 T-ATCCACTTC-----TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTAT 39846 | | ||| | | ||||| | || ||||||| || || || ||||| || || Sbjct 88028 TGAGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAAT 87969 Query 39847 AGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACT 39906 || || | | | || || | ||| || | || || || || ||||| Sbjct 87968 GGCGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGA 87909 Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 |||||||| || |||||||| ||||| || ||||| || ||||| || || | ||||| Sbjct 87908 GTACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTC 87849 Query 39967 AGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 || | || || || || || || | || | || || ||||| || |||||| Sbjct 87848 AGGCACCTGGACTTCGTTGCTGAAGTTCAT--GGCAAGGTTCTCGTTCACAATACCATCA 87791 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 || || || || || || | || || || || || | |||| | ||||| || Sbjct 87790 CTGGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCAAGTTG 87731 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 ||||||| |||| || | | ||| | || || | ||||| || || || Sbjct 87730 CTCCAGTCCTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCC 87671 Query 40145 GCCTTTTTGTACATGTTCCATATATC 40170 ||||| |||||||| | ||| || || Sbjct 87670 GCCTTCTTGTACATATCCCAGATCTC 87645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686899844426520