Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq549 163 4e-35 >seq549 Length=149600 Score = 163 bits (180), Expect = 4e-35 Identities = 384/576 (67%), Gaps = 8/576 (1%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 88486 TATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATC 88427 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGACGA 122490 |||||||||| || |||||| | || | || |||| | ||| |||||| Sbjct 88426 CAGTCAAATGGGTTGGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAGAAGACGA 88367 Query 122491 TCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 122550 || | || |||| ||||||| | |||| | | |||||||||||||| || | | Sbjct 88366 TCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCGACT 88307 Query 122551 GGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGG 122610 ||||| | |||| || |||| | ||||| ||| || || || | || || ||||| Sbjct 88306 GGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATCTCGTGG 88247 Query 122611 ATA---GTTTC-GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTC 122666 || | || || || ||| || | || | ||| ||||| ||| || || Sbjct 88246 ATTCGCGACTCTGGGAGACGGT-TAACAAGCT---TGTTGTAGAGCAAGCAGGCGAAGTC 88191 Query 122667 CTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAG 122726 ||||||||| ||||| || ||||| || || ||||||| || || |||||||| Sbjct 88190 ACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAG 88131 Query 122727 ACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 ||| |||||||| | ||| | | | |||||| || || ||||||||||||||||| | Sbjct 88130 ACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCAAT 88071 Query 122787 ACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCAT 122846 || || || | | || || || || | | || || ||| |||| | Sbjct 88070 GGCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACCAGCGGAG 88011 Query 122847 TGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTT 122906 ||||| || |||||||||| | ||||| | || | ||||| || || || || Sbjct 88010 CGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTT 87951 Query 122907 CTTTTCAGATCCATCCTTAATGTATTTGTCAATCAA 122942 ||| || | ||||||| ||||| |||||||||| Sbjct 87950 CTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAA 87915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628023812032800