Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq549 185 1e-41 seq797 96.9 4e-15 >seq549 Length=149600 Score = 185 bits (204), Expect = 1e-41 Identities = 552/845 (65%), Gaps = 14/845 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||| ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 88486 TATTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATATCCATC 88427 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 | ||||||||||| | ||| | || | || |||| | ||| |||||| Sbjct 88426 CAGTCAAATGGGTTGGACGCGTTGTAGATCTTCGAGACACCAAGAGCGTGGAGAAGACGA 88367 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | |||| |||| ||||||| |||| | | |||||||||||||| || | | Sbjct 88366 TCAGCGACGAACTCGATGTACTGGCACATGAGCGCCGAGTTCATACCGATAAGCTCGACT 88307 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 ||||||| |||| || |||| ||||||| || || || || | || || |||| Sbjct 88306 GGGAGCGAGTCCTTGACGAACTCCTTCTCGATCGTGACGGCATCACTGACAATCTCGTGG 88247 Query 129968 ATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCC 130024 || | ||| | | | | || || | ||| |||| ||| || || Sbjct 88246 ATTCGCGACTCTGGGAGACGGTTAACAAGCT---TGTTGTAGAGCAAGCAGGCGAAGTCA 88190 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 ||||||||| || ||||| ||| || || |||||||||| || || ||||||||| Sbjct 88189 CAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGA 88130 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || |||||||| | |||||| | || || || || || ||||||||||| ||||| | Sbjct 88129 CCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCAATG 88070 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATC 130204 ||||| || | || |||||||||||| | | | || || ||| |||| | | Sbjct 88069 GCAGCGAAGGCGACGACACGCTCAGCAAACGCGGCGTTCTCTGAGTCACACCAGCGGAGC 88010 Query 130205 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 130264 ||||| | ||||| |||| | || |||| |||| || || || | | ||| Sbjct 88009 GCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTTC 87950 Query 130265 TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACC 130324 || || | | ||| ||||||||| | || || | || || |||| |||| Sbjct 87949 TTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGAGTGGATG 87890 Query 130325 ATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 | ||| |||||| ||| | ||||||| |||| ||||| | ||| || || | Sbjct 87889 TTCTCA--ATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCACCTGGACTTCGT 87832 Query 130383 CTGCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440 ||| || | | || | | ||||| ||||| ||||| |||| || ||||| Sbjct 87831 -TGCTGAAGT-TCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGCGAAGAACGC 87774 Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATC 130500 || | | ||| ||||| | | ||||| ||| ||| | | ||||||| | || || Sbjct 87773 GAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCAAGTTGCTCCAGTCCTTGAGGTC 87714 Query 130501 CTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTC 130560 | | ||||| | |||||| | ||||| ||| || |||||||| || | || Sbjct 87713 GTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTTGTACATATC 87654 Query 130561 CCAGA 130565 ||||| Sbjct 87653 CCAGA 87649 >seq797 Length=162424 Score = 96.9 bits (106), Expect = 4e-15 Identities = 255/379 (67%), Gaps = 18/379 (5%) Strand=Plus/Plus Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942 |||| || || || ||||| | ||||| || ||||||||||| | ||| | ||| Sbjct 53271 AACCAGTACCAATACCTTCACTACCGTTGACAAGAACCATTGGGATGACTGGAACATACC 53330 Query 178943 AGTCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCG 179002 | || ||||| |||| | || ||||| || | || ||||| || || ||| | Sbjct 53331 ACTCAGGTTCGATCGATTGACCATCATCGTCAAGGTAGTTGAGAACATCGTTATCCAGTG 53390 Query 179003 GATCAAAGATTTTACGAGCATCCCTGGT--GAGTTTTGTGAAGATGTACC--TCGTTTGA 179058 |||| |||| |||||| ||| ||| || ||||||||||| | | ||| Sbjct 53391 GATCGAAGAGGCATCGAGCA--AGAGGTTCGAGGTTGGTGAAGATGTAACGAGGGCTTG- 53447 Query 179059 GACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 179118 || || ||||| ||||| | ||||| || || ||||| |||| || | |||| Sbjct 53448 CAC-TGTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTG 53506 Query 179119 ATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACT 179178 || ||||| |||| | |||| | |||| |||||||| ||| ||| || ||| Sbjct 53507 ATGTTGTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTA-CCG---TAGATACT 53562 Query 179179 ----TCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAA-CTGCGCCACCT 179233 |||||||||||||||||||| | |||| || ||| || |||| || || |||| Sbjct 53563 TGCCTCACCGTGATGGTAAGCCGAATGCTCCGAGACGTAT-CCTCCAAGTTGGGCGACCT 53621 Query 179234 TCATCTCATCCTTGAGGTT 179252 | || || ||| ||||| Sbjct 53622 TGATTTCCGTCTTCAGGTT 53640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 180845 TCACGATGGAAAACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTC 180904 || ||| || || |||| || |||| || ||||||||||||||||| || || || | Sbjct 55410 TCTCGACGGTGAATTCCGTGGAGAAGATATTGGTCAACTTGGCACCGTAACCGTTTCGAC 55469 Query 180905 CACCAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAAAGG 180964 |||| ||| | |||| |||| ||| ||| |||| | | || | ||||||||||||| Sbjct 55470 CACCGACAGTCTTCTTTTTGTCGTCGTCGAAGTTACTTCCGGTCAAGAGGTGACCAAAGA 55529 Query 180965 TAAGTTCTGGA 180975 | ||||| ||| Sbjct 55530 TGAGTTCCGGA 55540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618427137151080