Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq549 152 6e-32 seq806 86.0 7e-12 >seq549 Length=149600 Score = 152 bits (168), Expect = 6e-32 Identities = 198/271 (73%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734 || |||| ||| || ||||||| || |||||||| || | || ||||| | ||| Sbjct 87918 ATTGACACGTACATCAAGGATGCCGCCGAGAAGAACCACTTGTTCCGCGCCATTGAGACA 87977 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT-CGCG 94793 | || || | || ||||| || | ||||| | |||| ||| || || ||| Sbjct 87978 ATCCCATGCGTGCAGAAGAAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAACGCC 88037 Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 | ||||||||||| || |||| || || ||||||||||||||||||| ||||| Sbjct 88038 G-CGTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTC 88096 Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 |||||| | | | |||||||||||||| ||||||||||| || ||| ||||||| || Sbjct 88097 GTTCTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAA 88156 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||||| |||||| || || |||||| Sbjct 88157 CGAGCTTATCAGTCGTGATGAAGGTCTCCAC 88187 >seq806 Length=732016 Score = 86.0 bits (94), Expect = 7e-12 Identities = 282/427 (66%), Gaps = 16/427 (4%) Strand=Plus/Minus Query 168278 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 168337 || |||||||| ||||||| ||||||| || | |||||| | |||| | |||| || Sbjct 455313 CCAGTACCGATGCCCTCTGAGCCGTTCAACAGCAGCATGGGCAAGATTGGTACGTAGTAG 455254 Query 168338 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATC----TCT 168393 | ||||| | ||| ||||||||| || | ||| | || | | || || ||| Sbjct 455253 TGAGGCTCCACTGGGTAACCATCGTCGTCGACGTAGCTCAGCAACGCGTCGTCGTCTTCT 455194 Query 168394 CGGATCAAAGATCTTTCGGGCAT-CTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAG 168452 ||| || | | || | | ||| || || || ||||| || | | | Sbjct 455193 GGGAACAG----CATACGCGTGTACTTCTGCAAGAAC-GTGAAGATGTAACGAGGACTCG 455139 Query 168453 ACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTG- 168511 ||||||||||||||| || |||||||| || ||||| | || | || | || | Sbjct 455138 CAGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGACCCGAAGGGTAGAGCA-ATGGC 455080 Query 168512 ATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCG-AGAGAGAC 168570 | ||||| | ||| | |||||| | ||||| || ||||| || | | | || || | Sbjct 455079 AAGTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACAATTGT-TGAGTGAAGTGATGC 455021 Query 168571 TTCACCGTGGTGGTACGCACTCTTCTCTGCGACA-AATGCCGCCAACTGCGCCACTTTCA 168629 ||||||||||||||| || | | ||| | ||| | |||| | ||||||||| || | Sbjct 455020 TTCACCGTGGTGGTATGCCGTATGCTC-ACTACAGTAACCCGCGAGCTGCGCCACCTTGA 454962 Query 168630 TCTCATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGA 168689 || | | |||| || | || || ||| ||| ||||| || || || ||||| Sbjct 454961 CTTCCTTCGTGAGTTTTCGCTTGAGACAAGCGAACAACACCTTACGCTGTGATACCTTGA 454902 Query 168690 GACCATC 168696 ||||||| Sbjct 454901 GACCATC 454895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253195737320