Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq549 194 2e-44 >seq549 Length=149600 Score = 194 bits (214), Expect = 2e-44 Identities = 543/823 (66%), Gaps = 23/823 (3%) Strand=Plus/Plus Query 59616 TTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAAT 59675 |||||| | ||||||||||| || || | ||||| ||||| ||| ||| | | Sbjct 87681 TTCTGGACGGTCGAGGAGATCGATCTTGTGCACGACCTCAAGGACTGGAGCAACTTGACC 87740 Query 59676 TACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATT 59735 || | |||| || ||||||||| || || || |||||||| || |||||||| ||| Sbjct 87741 GACAATGAGCGTCACTTCATCAAGCACGTGCTCGCGTTCTTCGCTGCCAGTGATGGTATT 87800 Query 59736 GTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 |||| || || | | ||||||||| ||| || |||||| | | || ||||| | Sbjct 87801 GTGAACGAGAACCTTGCCATGAACTTCAGCAACGAAGTCCAGGTGCCTGAAGCCCGCTGC 87860 Query 59796 TTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATC 59855 ||||||| | ||| || ||| |||||||| || | ||||||||| |||| Sbjct 87861 TTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCGGAAATGTACTCGCTGTTGATT 87920 Query 59856 GATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTC 59914 || | || |||||||| | | |||||| ||||||| ||||| ||||| || Sbjct 87921 GACACGTACATCAAGGATGCCGCCGAGAAGAACCACTTGTTCCGCGCCATTGAGACAATC 87980 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGG-ATGAGTCCTGGA--GCATC 59971 || || || | | || || | ||||| | | ||| ||| || || || | Sbjct 87981 CCATGC-GTGCAGAAGAAGGCCAACTGGGCGCTCCGCTGGTGTGACTCAGAGAACGCCGC 88039 Query 59972 ATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| | ||| || | || || || | | || || ||||||||||| || ||||| Sbjct 88040 GTTTGCTGAGCGTGTCGTCGCCTTCGCTGCCATTGAGGGTATCTTCTTCTCGGGTTCGTT 88099 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 ||| | | ||||||||||| |||||||| |||||||| ||||| || ||||| ||||| Sbjct 88100 CTGCTCGGTCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTCAGCTTCTCGAACGA 88159 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT 60151 ||| || || || || || ||||| || || || ||||| ||| | Sbjct 88160 GCTTATCAGTCGTGATGAAGGTCTCCACTGTGACTTCGCCTGCTTGCTCT----ACAACA 88215 Query 60152 A--TTGGAAAAATGCCCT-TCCAAGGAT-----ATTCACAAGATTGTTCAGTGGGCTTGT 60203 | ||| || || | ||| || | || ||| |||||| |||||| || Sbjct 88216 AGCTTGTTAA----CCGTCTCCCAGAGTCGCGAATCCACGAGATTG-TCAGTGATGCCGT 88270 Query 60204 GAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGC 60262 | | | |||| |||||| ||| || |||| ||| | | || || |||||| || | Sbjct 88271 CACGATCGAGAAGGAGTTCGTCAAGGACTCGCTCCCAGTCGAGCTTATCGGTATGAACTC 88330 Query 60263 TGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGA 60322 | ||| |||||||| |||| ||||| || || || | | |||| | Sbjct 88331 GGCGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTTCTCCACGCTCTTGGTGT 88390 Query 60323 AGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382 || ||| || | ||||| || ||||||||||| | |||||| | | || Sbjct 88391 CTCGAAGATCTACAACGCGTCCAACCCATTTGACTGGATGGATATGATCTCGCTCCAGGG 88450 Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425 |||||||||||||| |||||||| || || || || || ||| Sbjct 88451 CAAGACCAACTTCTTCGAGAAGCGTGTTGGTGAATACTCCAAG 88493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548517648607920