Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq797 167 3e-36 seq549 154 2e-32 seq806 136 4e-27 seq308 91.5 2e-13 >seq797 Length=162424 Score = 167 bits (184), Expect = 3e-36 Identities = 313/453 (69%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| || ||||| || ||| || | |||| ||| || | ||| ||||| || || Sbjct 53273 CCAGTACCAATACCTTCACTACCGTTGACAAGAACCATTGGGATGACTGGAACATACCAC 53332 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 ||||| || | | |||| || || | ||| ||||| || | || || ||| Sbjct 53333 TCAGGTTCGATCGATTGACCATCATCGTCAAGGTAGTTGAGAACATCGTTATCCAGTGGA 53392 Query 117272 TCGAATATGTTCTTGGTCCACG--GTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAG 117329 ||||| | | | | | || | || | ||| ||||| |||||||||| ||||||| Sbjct 53393 TCGAAGAGG--CATCGAGCAAGAGGTTCGAGGTTGGTGAAGATGTAACGAGGGCTTGCAC 53450 Query 117330 CATCCTTGCCACC-AGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGG 117388 |||||||| || | ||| ||||||||||| || || | ||| | | || | | Sbjct 53451 TGTCCTTGCCTCCCATCAAT-CGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTGATG 53509 Query 117389 TTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCA 117448 |||||| |||||| |||| ||| |||| ||||||||| ||||| | || || |||||| Sbjct 53510 TTGTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTACCGTAGATACTTGCCTCA 53569 Query 117449 CCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCT 117508 || || || || |||| ||||||| ||||| || | || || || ||||| || || Sbjct 53570 CCGTGATGGTAAGCCGAATGCTCCGAGACGTATCCTCCAAGTTGGGCGACCTTGATTTCC 53629 Query 117509 GACGTCAGGTTCTTCTTGAGGCAGGCATAA-ATCACCTTGCGCTGACTTGGCTTCAGACC 117567 | | ||||||| ||||| || || || | |||||| || ||| |||||| | ||| Sbjct 53630 GTCTTCAGGTTTCGTTTGAGACA-ACAGAAGAGCACCTTACGTTGAGATGGCTTAAAACC 53688 Query 117568 ATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 ||| | ||| |||||||| ||| | |||| Sbjct 53689 ATCGACAACGCTTGGGATCGATCGCAAGTTGTC 53721 Score = 149 bits (164), Expect = 7e-31 Identities = 305/452 (67%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || ||||||||| |||| ||| || | | || | || || Sbjct 53273 CCAGTACCAATACCTTCACTACCGTTGACAAGAACCATTGGGATGACTGGAACATACCAC 53332 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCC--- 151992 || || || | | |||||| ||||| | ||| || | ||| || || | || Sbjct 53333 TCAGGTTCGATCGATTGACCATCATCGTCAAGGTAGTTGAGAAC---ATCGTTATCCAGT 53389 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 |||||||| | | ||||| | ||| | ||||||||||| || | ||| || Sbjct 53390 GGATCGAAGAGGCATCGAGCAAGAGGTTCGAGGTTGGTGAAGATGTAACGAGGGCTTGCA 53449 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 |||||||| || || ||||| || ||||| || ||| ||| | |||| | Sbjct 53450 CTGTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTGATG 53509 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 |||||| ||||||||| | || |||| || ||||| || || | | ||| || ||| Sbjct 53510 TTGTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTACCGTAGATACTTGCCTCA 53569 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 ||||| || || |||| ||||||| || |||||| | | || || ||||| || ||| Sbjct 53570 CCGTGATGGTAAGCCGAATGCTCCGAGACGTATCCTCCAAGTTGGGCGACCTTGATTTCC 53629 Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCG 152292 ||| ||||||| |||||||| | | | |||||| || || ||||| || ||||| Sbjct 53630 GTCTTCAGGTTTCGTTTGAGACAACAGAAGAGCACCTTACGTTGAGATGGCTTAAAACCA 53689 Query 152293 TCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 || || ||| || ||||| ||| | |||| Sbjct 53690 TCGACAACGCTTGGGATCGATCGCAAGTTGTC 53721 >seq549 Length=149600 Score = 154 bits (170), Expect = 2e-32 Identities = 354/526 (67%), Gaps = 9/526 (2%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||| | || || | || ||||| || ||||||||||| || ||||||||| Sbjct 88180 CCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCACGCTTC 88121 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| |||| | ||||| ||||| ||||||||| || || | || ||| Sbjct 88120 TTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAGAAGATACCCTCAATGGCAGCGAAG 88061 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCAT---CGGAAGTCATCCAAGTCTGAGC--CCATT 74943 ||||| | || | || |||| || | | || |||| | || | |||| ||| | Sbjct 88060 GCGACGACACGCTCAGCAAACGCGGCGTTCTCTGA-GTCACACCAG-CGGAGCGCCCAGT 88003 Query 74944 CAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCT 75002 || || | | || |||| |||| || || || || |||| | | |||||| Sbjct 88002 TGGCCTT-CTTCTGCACGCATGGGATTGTCTCAATGGCGCGGAACAAGTGGTTCTTCTCG 87944 Query 75003 TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCG 75062 ||| |||||||| | | ||||||||| || |||||| | ||||| || || ||| Sbjct 87943 GCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGTACATTTCCGAGTGGATGTTCTCA 87884 Query 75063 TTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAA 75122 || |||| | ||||||| | || || || | | ||| || || || || Sbjct 87883 ATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAGGCACCTGGACTTCGTTGCTGAAG 87824 Query 75123 TTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATT 75182 |||||| | | ||||| | || || || || ||| ||||| || || || || Sbjct 87823 TTCATGGCAAGGTTCTCGTTCACAATACCATCACTGGCAGCGAAGAACGCGAGCACGTGC 87764 Query 75183 TTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAA 75242 ||||| ||||| ||||||| ||| || | ||| ||| ||||| ||||| | | | | Sbjct 87763 TTGATGAAGTGACGCTCATTGTCGGTCAAGTTGCTCCAGTCCTTGAGGTCGTGCACAAGA 87704 Query 75243 TCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 || |||||||||||||||||||| || | |||||| ||||||| Sbjct 87703 TCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGCCTTCTTGTACA 87658 >seq806 Length=732016 Score = 136 bits (150), Expect = 4e-27 Identities = 291/427 (68%), Gaps = 12/427 (3%) Strand=Plus/Minus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209 ||||||| ||||| ||||||| || |||| ||| | ||| |||| || || |||||| Sbjct 455315 ACCCAGTACCGATGCCCTCTGAGCCGTTCAACAGCAGCATGGGCAAGATTGGTACGTAGT 455256 Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCA---- 117265 | | ||||||||| | ||| ||||| |||||| | |||| ||| | ||| Sbjct 455255 AGTGAGGCTCCACTGGGTAACCATCGTCGTCGACGTAGCTCAGCAACGCGTCGTCGTCTT 455196 Query 117266 CTCGGATC-GAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCT 117324 || ||| | | ||| | | || | | ||| || ||||| |||||||||| || Sbjct 455195 CTGGGAACAGCATACG--CGTGTACTTC--TGCAAGAAC-GTGAAGATGTAACGAGGACT 455141 Query 117325 TGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTT 117384 ||||||||||| ||||| ||| |||||||||||||| || || | | | Sbjct 455140 CGCAGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGACCCGAAGGGTAGAGCAATGG 455081 Query 117385 CAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGC 117444 || |||||| || || || ||| || |||| || ||||| || || || || Sbjct 455080 CAAGTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACAATTGTTGAGTGAAGTGATGC 455021 Query 117445 CTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCTTCA 117503 ||||| ||||| || ||||| ||||| | || ||| ||||| ||||| |||||||| | Sbjct 455020 TTCACCGTGGTGGTATGCCGTATGCTCACTACA-GTAACCCGCGAGCTGCGCCACCTTGA 454962 Query 117504 TGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563 || ||| || || |||||| || || | | |||||| ||||| | ||| | Sbjct 454961 CTTCCTTCGTGAGTTTTCGCTTGAGACAAGCGAACAACACCTTACGCTGTGATACCTTGA 454902 Query 117564 GACCATC 117570 ||||||| Sbjct 454901 GACCATC 454895 Score = 132 bits (146), Expect = 5e-26 Identities = 181/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||||||||| || | || || |||||||| ||||| || ||||| || || || Sbjct 455161 CGTGAAGATGTAACGAGGACTCGCAGCATCCTTACCACCCTGAAGTCGCGTACCGAATTG 455102 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | ||| | | |||||| || || ||| | | ||| |||| |||||| Sbjct 455101 ACCCGAAGGGTAGAGCAATGGCAAGTTGTTCGCACCAACGTAGTCCTGCGCCATATTCAC 455042 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 ||| || || || |||||||||||||| || ||||| ||||| ||| || Sbjct 455041 AATTGTTGAGTGAAGTGATGCTTCACCGTGGTGGTATGCCGTATGCTCACTACAGTAACC 454982 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 ||| | |||||||||||| | ||| |||| || || ||||||||| ||| | | ||| Sbjct 454981 CGCGAGCTGCGCCACCTTGACTTCCTTCGTGAGTTTTCGCTTGAGACAAGCGAACAACAC 454922 Query 152268 CTTGCGCTGGGAT 152280 ||| ||||| ||| Sbjct 454921 CTTACGCTGTGAT 454909 >seq308 Length=64091 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 124487 CTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAAT 124546 ||||| |||||||||| |||||| ||| || || | | || ||||||||||| | Sbjct 25742 CTCGACGAACTCACGGACGCTGTGACACTCTCCGGTAGCGACGACAAAATCTTCGGGCGT 25683 Query 124547 CGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCG 124606 ||||||| ||| |||||||| | ||| ||||| | ||||||||||| || || Sbjct 25682 TTCTTGCTGCATCATGCGCCACATGCACTCGACATAGTCTTTGGCGTGCCCCCAATCACG 25623 Query 124607 CTTGGCATCCAGGTTTCC 124624 ||| ||||| |||||||| Sbjct 25622 CTTTGCATCTAGGTTTCC 25605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208865671400