Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1035 152 6e-32 seq148 140 4e-28 seq806 132 5e-26 seq308 118 1e-21 seq132 95.1 1e-14 seq797 87.8 2e-12 >seq1035 Length=208423 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || || || ||| || Sbjct 98574 ATGCAGATCTTTGTGAAGACTCTGACGGGCAAGACCATCACGCTCGATGTCGAGCCATCG 98515 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||||| || | ||| || || ||||||||||| |||||||| ||||||||| Sbjct 98514 GACAGCATTGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGAATTCCACCAGACCAG 98455 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| |||||||||| || || || | ||||| || Sbjct 98454 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAAC 98395 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || | || | || | |||||||| ||||| Sbjct 98394 ATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGTCTTCGTGGTGG 98348 >seq148 Length=18536 Score = 140 bits (154), Expect = 4e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| ||||| | || || ||| | Sbjct 18295 ATGCAGATCTTCGTCAAGACACTCACCGGCAAGACCATTACGTTGGACGTCGAGCCTTCA 18354 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| | ||| || || ||||||||||| || ||||||||||| ||| Sbjct 18355 GACTCGATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAG 18414 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||||||||| |||||||| | |||||||| | ||||| || Sbjct 18415 CAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAAC 18474 Query 27586 GTCCAAAAGGAATCCAC 27602 |||| ||||| || || Sbjct 18475 ATCCAGAAGGAGTCTAC 18491 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | ||||||||||| |||||||| || || ||| | Sbjct 320 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACCATTACTCTCGACGTCGAGCCTTCG 261 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || | ||| || || ||||||||||| || ||||||||||| ||| Sbjct 260 GACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 201 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | ||||| ||||| ||||| |||||||| | |||||||| | ||||| || Sbjct 200 CAGCGATTGATTTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACCCTCTCGGACTACAAC 141 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || | || | || | || ||||| ||||| Sbjct 140 ATCCAGAAGGAGTCTACGTTGCACTTGGTGCTCCGCCTTCGTGGTGG 94 >seq806 Length=732016 Score = 132 bits (146), Expect = 5e-26 Identities = 191/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 || || |||||| |||||||| |||||| | | ||| || |||||| || || || Sbjct 454895 GATGGTCTCAAGGTATCACAGCGTAAGGTGTTGTTCGCTTGTCTCAAGCGAAAACTCACG 454954 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTAC-GTGGCAGAGCAAACGGCCTATCACCA 32102 | || | |||||||||||||| |||| ||| || | ||||| ||||| || ||||| Sbjct 454955 AAGGAAGTCAAGGTGGCGCAGCTCGCGGGTTACTGTAG-TGAGCATACGGCATACCACCA 455013 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 ||| || || || || || || ||||| || | || ||| ||| || ||||| || Sbjct 455014 CGGTGAAGCATCACTTCACTCAACAATTGTGAATATGGCGCAGGACTACGTTGGTGCGAA 455073 Query 32163 TAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGA 32222 ||| || || ||| | || || || || || || || || || ||||| ||||| Sbjct 455074 CAACTTGCCATTGCTCTACCCTTCGGGTCAATTCGGTACGCGACTTCAGGGTGGTAAGGA 455133 Query 32223 TGCTGCGAGCTCCCGTTACATCTTCAC 32249 ||||||||| | |||||||||||||| Sbjct 455134 TGCTGCGAGTCCTCGTTACATCTTCAC 455160 >seq308 Length=64091 Score = 118 bits (130), Expect = 1e-21 Identities = 249/371 (67%), Gaps = 13/371 (4%) Strand=Plus/Plus Query 24737 TACGAGTGAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTA 24796 |||||| ||| ||| ||||| | ||| | |||||| ||| || ||| || || || Sbjct 25346 TACGAGCGAGCTGTACGGCAAAGCGCAAGTGACGCCTCAGAGTGAACTCACGCCGTTCTA 25405 Query 24797 TCCGCGAAGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCG 24856 ||| || || || |||||||||||| || |||| |||| | ||||| || Sbjct 25406 TCCACGCTCGCCTTACGGGGTCTCAAAGCAATTTGCGTTTTGGAGTGTCGTCAACTATCG 25465 Query 24857 TGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTCGGAGCGTCG 24916 ||| ||| | || || || ||| || ||||| |||||||| |||||| || || Sbjct 25466 TGAAGCCTACGGAATGTACGCAGTGAATGGAATACTGTTCAATCATGAGAGTCCTCGGCG 25525 Query 24917 GGGACCTGAATTTGTTACACGAAAGATTACTCTTGGTATTGACCATTGGATCAAGAC--- 24973 || || ||| || || || ||||| || | || | | | || | ||| || | Sbjct 25526 AGGGCCAACATTCGTCACCCGCAAGATCACACGTGCTGTAGTCC---GAATCCAGGCCGG 25582 Query 24974 -----AAGGGCACCTATTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCA 25028 ||| | || | | | |||||||||||||| || |||||||||||||| || Sbjct 25583 TATTGAAGAGTGTCTTTACA--TTGGAAACCTAGATGCAAAGCGTGATTGGGGGCACGCC 25640 Query 25029 GCCGACTACGTCGACGCCATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTG 25088 ||||| ||||| ||||||||||||| | || || | | ||| || |||||||| Sbjct 25641 AAAGACTATGTCGAGTGCATGTGGCGCATGATGCAGCAAGAAACGCCCGAAGATTTTGTC 25700 Query 25089 ATCGGCACCGG 25099 ||| ||||| Sbjct 25701 GTCGCTACCGG 25711 >seq132 Length=57701 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 |||||||||||||| ||||||||||| || || ||||||||||| || ||||||| || Sbjct 9972 GGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGC 9913 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||| | | ||||| || |||| ||||| || || || || | || | || ||||| Sbjct 9912 ACCTTGTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTGCTCCGCCTTCGT 9853 Query 27628 GGTGG 27632 ||||| Sbjct 9852 GGTGG 9848 >seq797 Length=162424 Score = 87.8 bits (96), Expect = 2e-12 Identities = 200/301 (66%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 31962 GCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGC 32021 ||| || || ||| ||| | || || | ||||| || || || |||||| | | | Sbjct 53713 GCGATCGATCCCAAGCGTTGTCGATGGTTTTAAGCCATCTCAACGTAAGGTGCTCTTCTG 53654 Query 32022 CTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGC 32081 || ||||| |||||| || || || ||||| || || || || ||||| | Sbjct 53653 TTGTCTCAAACGAAACCTGAAGACGGAAATCAAGGTCGCCCAACTTGGAGGATACGTCTC 53594 Query 32082 AGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGC 32141 ||||| |||| || || ||||| ||||| || | || || ||||||||| | || Sbjct 53593 GGAGCATTCGGCTTACCATCACGGTGAGGCAAGTATCTACGGTACAATTGTCAACATGGC 53534 Query 32142 TCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGAC 32201 || |||| || || || ||| | || || ||| |||| || ||||| || || Sbjct 53533 GCAAGACTTCGTGGGCAGCAACAACATCAATTTGCTCTCGCCAAACGGTCAGTTCGGTAC 53474 Query 32202 CCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACC 32261 || | || |||||||| ||| ||| | ||||||||||||||| |||| ||| Sbjct 53473 GCGATTGATGGGAGGCAAGGACAGTGCAAGCCCTCGTTACATCTTCACCAACCTCGAACC 53414 Query 32262 T 32262 | Sbjct 53413 T 53413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570302964578160