Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq272 156 3e-33 >seq272 Length=54113 Score = 156 bits (172), Expect = 3e-33 Identities = 388/583 (67%), Gaps = 6/583 (1%) Strand=Plus/Plus Query 29871 TCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACT 29930 |||| ||||| || | || | || ||||| ||| || || || | | ||||| || | Sbjct 10245 TCTTGAGCGGCTCGAGGTGGTTCAAGTAGATGTGTGCATCACCAATGACATGGACGAAGT 10304 Query 29931 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 29990 | || | | ||||| | ||| ||||| |||| || | | | ||| ||||||| Sbjct 10305 CACCGGCCTTGAGCCCAGCGACCTGAGCGATCAATCGGGTCAACAACGCGTAACTGGCGA 10364 Query 29991 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 30050 | ||||| || || ||||| |||||||| |||| | |||||| | || |||||||||| Sbjct 10365 TATTAAACGGCACACCGAGGCCCATGTCAGCCGATCGCTGGTACATTTGGCACGAGAGCT 10424 Query 30051 CTCC-GTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCC 30109 | || |||| ||||| ||||| || | ||||||||||||||| ||||| Sbjct 10425 CGCCATTCGC-GACGTAGAACTGGCAGAACATGTGGCACGGAGGAAGCGCCATCTCCTTG 10483 Query 30110 AAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATG 30169 | |||| || ||||| || ||| || || |||| ||| | |||||| || | | Sbjct 10484 AGGTCTGCTGGATTCCATGCAGACAAGAGAATACGCCGGTCGTTCGGGTTGGTCTTAAGC 10543 Query 30170 AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCC 30229 || | | | | ||||||||||| ||| || | ||| || || ||| || Sbjct 10544 TTGTGGATGACCTCAGCGAGCTGATCCACACCCTGACCGGTGTAATCGGCGTGCATATCG 10603 Query 30230 GTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCT 30289 || |||| || || || || | ||||||||| || ||||| || || || || || || Sbjct 10604 GTATACTTGGCACCAAAGTGACGCCACTGGAAGCCATACACTGGACCGAGATCGCCTGCT 10663 Query 30290 TCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30349 || | || ||| || | | || | | || | || || ||| ||||||| || Sbjct 10664 TCGCGATGACCGAGACCGATGCTTTCTAGGTATTCCTTCGATCCATTGCCGTCCCAAATA 10723 Query 30350 TTTACCCCCTTCTC--AGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 30407 | | |||| || ||||| || |||| || ||| || |||| |||||||| || Sbjct 10724 TGAATGTCCTTGTCCTGGAGAG-TC-TTGGCATTCGTGTCACCGCTGATGAACCACAACA 10781 Query 30408 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30450 |||| || | ||| | ||| || || | ||| |||||||| Sbjct 10782 GCTCTTCTGCAACGCCACGCCAGAACACGCGCTTCGTCGTGAG 10824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406305235159956