Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq272 206 2e-48 >seq272 Length=54113 Score = 206 bits (228), Expect = 2e-48 Identities = 486/728 (67%), Gaps = 7/728 (1%) Strand=Plus/Plus Query 6424 GTGCGGCCGGTACCCTTCCAACACGAAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGAC 6483 ||||||| |||||| |||| | | ||||| || | |||||| ||||| ||| Sbjct 10132 GTGCGGCTTGTACCCATCCAGCTCAAAGTCTCCGAACTCAAAGTCGTCGATGTTGGTCTT 10191 Query 6484 GGCTCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAG 6543 || || | || ||| |||||||| || || ||| || ||||||| ||| Sbjct 10192 CTCTGGATTGATGCGAAGCGTCGGGAACGGACGAGGAGTGCGTCCCAACTGGATCTTGAG 10251 Query 6544 CCGCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGG 6603 | |||||| |||||||| |||||| || ||||| || | ||| || | || || | Sbjct 10252 CGGCTCGAGGTGGTTCAAGTAGATGTGTGCATCACCAATGACATGGACGAAGTCACCGGC 10311 Query 6604 AACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAA 6663 | ||| |||| |||||||||| || | || |||||||| || || || || Sbjct 10312 CTTGAGCCCAGCGACCTGAGCGATCAATCGGGTCAACAACGCGTAACTGGCGATATTAAA 10371 Query 6664 CGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT 6723 |||||| || | |||||||| ||||||| || || | ||||| || ||||| ||||| Sbjct 10372 CGGCACACCGAGGCCCATGTCAGCCGATCGCTGGTACATTTGGCACGAGAGCTCGCCATT 10431 Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 |||||||||||| ||||||| |||||||||| || ||||||||| ||| || Sbjct 10432 CGCGACGTAGAACTGGCAGAACATGTGGCACGGAGGAAGCGCCATCTCCTTGAGGTCTGC 10491 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 || ||||| || ||| | || | | ||| | ||||| ||| | ||| ||| Sbjct 10492 TGGATTCCATGCAGACAAGAGAATACGCCGGTCGTTCGGGTTGGTCTTAAGCTTGTGGAT 10551 Query 6844 CACGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACT 6902 || | | || ||||| ||| | ||||| || | || || || | | | ||||| Sbjct 10552 GACCT-CAGCGAGCTGATCCACACCCTGACCGGTGTAATCGGCGTGCATATCGGTATACT 10610 Query 6903 CCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA- 6961 || |||||||| | ||||||||| || || || || || | ||||| | || ||| Sbjct 10611 TGGCACCAAAGTGACGCCACTGGAAGCCATACACTGGACCGAGATCGCCTGCTTCGCGAT 10670 Query 6962 GATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACC 7021 || | ||| |||| || || | || || || | ||||||| || | | Sbjct 10671 GACCGAGACCGATGCTT-TCTAGGTATTCCTTCGATCCATTGCCGTCCCAAATATGAATG 10729 Query 7022 CCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCG 7081 || | | ||| ||||| |||||| | || || | |||||||| |||||| || Sbjct 10730 TCCTTGTCCTGGAGAGTCTTGGCATTCGTGTCACCGCTGATGAACCACAACAGCTCTTCT 10789 Query 7082 ACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGG 7138 | ||||| |||| |||| || |||||||| |||| ||| || ||| || ||| Sbjct 10790 GCAACGCCACGCCAGAACACGCGCTTCGTCGTGAGCACCGGGAACACGTCGTTACGCAGG 10849 Query 7139 TTGTATCG 7146 ||| |||| Sbjct 10850 TTGAATCG 10857 Score = 206 bits (228), Expect = 2e-48 Identities = 486/728 (67%), Gaps = 7/728 (1%) Strand=Plus/Minus Query 34199 CGATACAACCTTCGGGGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAG 34255 |||| |||||| || ||| || ||| |||| |||||||| || |||| |||| Sbjct 10857 CGATTCAACCTGCGTAACGACGTGTTCCCGGTGCTCACGACGAAGCGCGTGTTCTGGCGT 10798 Query 34256 GGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCG 34315 ||||| | || |||||| |||||||| | || || | |||||| ||||| ||| | Sbjct 10797 GGCGTTGCAGAAGAGCTGTTGTGGTTCATCAGCGGTGACACGAATGCCAAGACTCTCCAG 10738 Query 34316 TCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG 34375 | || | | || ||||||| | || || || | || || |||| || Sbjct 10737 GACAAGGACATTCATATTTGGGACGGCAATGGATCGAAGGAATACCTAGA-AAGCATCGG 10679 Query 34376 TTCCCATC-TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTT 34434 | | || ||| || | ||||| | || || || || || ||||||||| | ||||| Sbjct 10678 TCTCGGTCATCGCGAAGCAGGCGATCTCGGTCCAGTGTATGGCTTCCAGTGGCGTCACTT 10619 Query 34435 TGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GC 34493 ||| || ||||| | | | || || || | || ||||| | ||| ||||| || Sbjct 10618 TGGTGCCAAGTATACCGATATGCACGCCGATTACACCGGTCAGGGTGTGGATCAGCTCGC 10559 Query 34494 AGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGT 34553 | | || ||| ||| | ||| ||||| | ||| | | || | ||| || | Sbjct 10558 TG-AGGTCATCCACAAGCTTAAGACCAACCCGAACGACCGGCGTATTCTCTTGTCTGCAT 10500 Query 34554 GGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCT 34613 |||| || || ||| ||||||||| || |||||||||| ||||||| |||| Sbjct 10499 GGAATCCAGCAGACCTCAAGGAGATGGCGCTTCCTCCGTGCCACATGTTCTGCCAGTTCT 10440 Query 34614 ACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAG 34673 ||||||||||||| ||||| || ||||| | || || ||||||| |||||||| | | Sbjct 10439 ACGTCGCGAATGGCGAGCTCTCGTGCCAAATGTACCAGCGATCGGCTGACATGGGCCTCG 10380 Query 34674 GGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGG 34733 | |||||||| || || || |||||||| || | || |||||||||| |||| | Sbjct 10379 GTGTGCCGTTTAATATCGCCAGTTACGCGTTGTTGACCCGATTGATCGCTCAGGTCGCTG 10320 Query 34734 GGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACA 34793 || | | || || | || ||| | || ||||| || |||||| |||||||| Sbjct 10319 GGCTCAAGGCCGGTGACTTCGTCCATGTCATTGGTGATGCACACATCTACTTGAACCACC 10260 Query 34794 TCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTA 34853 |||||| |||| ||||||| || ||| || || |||||||| ||| || | Sbjct 10259 TCGAGCCGCTCAAGATCCAGTTGGGACGCACTCCTCGTCCGTTCCCGACGCTTCGCATCA 10200 Query 34854 TTCGAGCCGTCACCTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACC 34913 || || ||| ||||| |||||| | || ||||| | | |||| |||||| Sbjct 10199 ATCCAGAGAAGACCAACATCGACGACTTTGAGTTCGGAGACTTTGAGCTGGATGGGTACA 10140 Query 34914 GGCCGCAC 34921 ||||||| Sbjct 10139 AGCCGCAC 10132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448256555778960