Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1035 176 1e-38 seq148 145 2e-29 seq132 93.3 1e-13 >seq1035 Length=208423 Score = 176 bits (194), Expect = 1e-38 Identities = 174/225 (77%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | || ||||| || |||||||| || |||| || || Sbjct 98353 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 98412 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| |||||||| || || || ||||| || |||| ||| Sbjct 98413 GCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCC 98472 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || || ||||| || ||| |||| || || || ||||| Sbjct 98473 TTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAG 98532 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||||| ||||| |||||||| ||||| | |||||| || Sbjct 98533 CGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 98577 >seq148 Length=18536 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | || ||||| || |||||||| || |||| ||||| Sbjct 99 ACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGT 158 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| ||||| || | || || || || ||||||| || Sbjct 159 ACGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCTGGAGGAATGCC 218 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || || ||||| ||||| | ||| || || || ||||| Sbjct 219 TTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAG 278 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || ||||| || || | ||||| || || | |||||| || Sbjct 279 AGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATCTT 323 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| || |||| ||||| | || || || |||||||| || Sbjct 18491 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGCTTACCA 18432 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | || || || || ||||||| |||||||||||||||||||| || || Sbjct 18431 GCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTG 18372 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||| | ||| || || || || | || || ||||| || ||||| ||| Sbjct 18371 ACATTGTCGATCGAGTCTGAAGGCTCGACGTCCAACGTAATGGTCTTGCCGGTGAGTGTC 18312 Query 211098 TTTACAAACACCTGCATTTT 211117 || || || | |||||| || Sbjct 18311 TTGACGAAGATCTGCATCTT 18292 >seq132 Length=57701 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||||||||||||||| || || || || || ||| |||| || |||||| || Sbjct 10046 CCTTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCGGATGGTTCAACATCC 10105 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 10106 AGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 10149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159136509744695