Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq184 197 3e-45 seq186 196 1e-44 seq718 194 4e-44 seq720 134 3e-26 seq1035 127 5e-24 seq148 118 3e-21 seq260 93.3 1e-13 seq985 86.0 1e-11 >seq184 Length=2923 Score = 197 bits (218), Expect = 3e-45 Identities = 216/287 (75%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||||||||| ||||||| ||||||||| | | ||||| | || ||||| | Sbjct 1811 ACTTTATATTTAATTTTTGGTGCTTTTTCTGGTGTAGTTGGTACAACTTTATCTATTTTA 1870 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 || || | |||||||| || ||| |||||| || | || ||| || | || Sbjct 1871 ATTAGAATGGAATTAGCACAACCAGGTAATCAAATTTTTATGGGAAATCATCATTTATAT 1930 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 ||||| || | || || ||||| ||| |||||||||||||| | |||||||| || | Sbjct 1931 AACGTGGTTGTAACTGCACATGCGTTTATTATGATTTTCTTTATGGTTATGCCTGTATTA 1990 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 || || ||||| || ||||| || | |||||||||||||||||||| |||||||||||| Sbjct 1991 ATTGGTGGTTTTGGTAATTGGTTTATACCTTTAATGATTGGTGCTCCAGATATGGCTTTT 2050 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||||| | || ||||| |||||||| ||| |||| || || ||||| Sbjct 2051 CCAAGAATGAATAATATTAGTTTTTGGTTATTACCACCATCTTTATT 2097 Score = 105 bits (116), Expect = 2e-17 Identities = 86/103 (83%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || ||||||||||| || || |||||||||||||| | | ||||| ||||| |||||| Sbjct 2493 TCTGGATGACCAAAGAACCAAAATAAATGTTGATATAACACTGGATCTCCTCCTCCTGAT 2434 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| |||||| ||||||||||||||||| |||| Sbjct 2433 GGATCATAAAACGAAGTATTTAAATTTCTATCAGTTAATAACA 2391 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || || ||| |||| | | |||||||||| ||||||||||| | || || | | ||| Sbjct 2316 AAAGGCAATCTATGAAAACTTAAACCAGGTGCTCTCATATTATAAATAGTTGATAAAAAA 2257 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| | || || ||||||| | |||||||||||| || |||||||| Sbjct 2256 TTAATTGCACCTAATAATGATGAAATACCTGATAAATGTAAACTAAAAATAGCTAAATCT 2197 Query 371485 ACGGAACCGCCGGAGTGAGCT---ACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || ||||| ||| ||| |||| ||| || || || ||||| || || Sbjct 2196 ACAGAAGGTCCTGAGTGTGCTTGAACACTAGA---TAAAGGTGGATATACTGTCCAACCT 2140 Query 371542 GT 371543 || Sbjct 2139 GT 2138 >seq186 Length=35805 Score = 196 bits (216), Expect = 1e-44 Identities = 216/288 (75%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| ||| ||| | ||| || | ||||| | ||| ||| | | Sbjct 21690 AACTTTATATTTAATTTTTAGTGCTTTTGCGGGTGTTGTTGGTACAACATTATCTCTTTT 21631 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||||| || ||| |||||| || | |||||| ||| | || Sbjct 21630 AATTCGTATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGTAATCATCAATTATA 21571 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| || |||| || ||||| ||| ||||| |||||||||| |||||||| | | | Sbjct 21570 TAATGTTGTTGTTACTGCTCATGCTTTTATTATGGTTTTCTTTTTAGTTATGCCAGCTTT 21511 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| || ||||| || |||||||||||||| ||||| |||||||||||||| Sbjct 21510 AATTGGAGGTTTTGGTAATTGGTTTGTTCCTTTAATGATAGGTGCACCTGATATGGCTTT 21451 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| | | || |||||||||||||| ||| |||| || | ||||| Sbjct 21450 TCCTCGTATGAATAATATAAGTTTTTGGTTATTACCTCCAGCTTTATT 21403 Score = 131 bits (144), Expect = 4e-25 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| |||||||||||||| |||||||| || ||||||||||||||||||||||| Sbjct 17299 GAAAATTTGTCCATCAGTAATAGAAATAACATTAGTTGGGATATAAGCAGAAACATCACC 17240 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | | ||||| ||||||| ||| |||||||||| ||| |||| Sbjct 17239 AGCTTGAGTTTCAATTATTGGTAAAGCTGTTAATGAACCACCACCAATTTTTCTATT 17183 Score = 118 bits (130), Expect = 3e-21 Identities = 136/182 (75%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||||||| | || || | |||||| Sbjct 21184 AAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATATTATAAATAGTTGAAATAAAA 21243 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || || || |||| | ||||| ||||||| | |||||||||||| || |||||||| Sbjct 21244 TTAATTGCACCTAATAATGAAGAGATACCTGTTAAATGTAAACTAAAAATAGCTAAATCT 21303 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || |||||||| |||| |||| ||| || || |||||||| || || Sbjct 21304 ACAGAAGGACCTGAGTGAGCTTGTACACTAGA---TAATGGTGGATAAACTGTCCAACCT 21360 Query 371542 GT 371543 || Sbjct 21361 GT 21362 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| |||||||| ||||| || |||||||||||||| | | ||||| ||||| || || Sbjct 21006 TTCCGGATGACCGAAAAACCAAAATAAATGTTGATATAATACTGGATCACCTCCACCAGA 21065 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| |||||| ||||||||||||||||| |||| Sbjct 21066 AGGATCATAAAAAGAAGTATTTAAATTTCTATCAGTTAATAACA 21109 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 ||||| | || || || |||||||||| | |||| |||||||||||||||||||||||| Sbjct 16973 CAATATTTAGCTCCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGATAATGGTAAA 17032 Query 5082 CATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 || || |||| | || ||||||||| |||||| Sbjct 17033 CACGCCGTAATTTTTTATGATGATTTATCAAAACAA 17068 >seq718 Length=9704 Score = 194 bits (214), Expect = 4e-44 Identities = 215/287 (75%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||||||||| || |||| || || ||| || | ||||| | || || | | Sbjct 3503 ACTTTATATTTAATTTTCGGTGCTTTCTCAGGTGTTGTTGGTACAACTTTATCAGTTTTA 3444 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 || || | |||||||| || ||| |||||| || | || ||| || | || Sbjct 3443 ATTAGAATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCATTTATAT 3384 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || ||| || |||| || ||||| ||| ||||||||||||| | |||||||| ||| | Sbjct 3383 AATGTTGTTGTTACAGCACATGCTTTTATTATGATTTTCTTCATGGTTATGCCTGTTTTA 3324 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 ||||| |||||||| || || || |||||||||||||||||||| || |||||||||||| Sbjct 3323 ATAGGTGGTTTCGGTAACTGGTTTGTTCCTTTAATGATTGGTGCACCAGATATGGCTTTT 3264 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || || | || ||||| |||||||| ||| |||| ||||| ||||| Sbjct 3263 CCTAGAATGAATAATATTAGTTTTTGGTTATTACCACCTTCGTTATT 3217 Score = 109 bits (120), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||||||| | || || | || ||| Sbjct 2998 AAAGGTAATCTATGGAAACTTAAACCAGGAGCTCTCATATTATAAATTGTTGAAAGAAAA 3057 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | ||| || ||||||| | ||||||||||||||| |||||||| Sbjct 3058 TTAATAGCACCTAATAAAGATGAAATACCTGATAAATGTAAACTAAATATAGCTAAATCT 3117 Query 371485 ACGGAACCGCCGGAGTGAGCT---ACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || ||||| ||| ||| |||| ||| || || || || || || || Sbjct 3118 ACAGAAGGACCAGAGTGTGCTTGAACACTAGA---TAAAGGAGGATATACAGTCCAACCA 3174 Query 371542 GT 371543 || Sbjct 3175 GT 3176 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 372296 ATAATTATCAGGATAATCGGGGATCCTTCGTGGCATACCCGCTAAACCAACGAAATGCAT 372355 |||| ||||||| |||| || || |||| |||||||| |||||||| | ||| ||||| Sbjct 2208 ATAAGCATCAGGAAAATCAGGTATTCTTCTAGGCATACCAGCTAAACCTAAGAAGTGCAT 2267 Query 372356 CGGGAAAAATGTTAAATTAACGCCAAT 372382 |||||||||||||||||||| ||||| Sbjct 2268 TGGGAAAAATGTTAAATTAACACCAAT 2294 >seq720 Length=20439 Score = 134 bits (148), Expect = 3e-26 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| |||||||| ||||| || || || |||||||||||||||||||| Sbjct 13370 GAAAATTTGACCATCTGTAATAGAAATAACGTTAGTTGGAATATAAGCAGAAACATCACC 13311 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||| | |||||||| ||||||| ||| |||||||| | |||||||| Sbjct 13310 AGCTTGTGTTTCAATTACAGGTAAAGCTGTTAATGAACCACCACCTATTTTTTTATT 13254 Score = 96.9 bits (106), Expect = 8e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 |||| | | || ||||| || ||||||| | ||||||||||||| ||||||||||||||| Sbjct 13044 CAATTCTTAGCTCCATATACTGGTTGTGCTTTAGGAGAATATTTCAGAGATAATGGTAAA 13103 Query 5082 CATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 |||||| | || | || ||||||||| ||||||| Sbjct 13104 CATGCTGTTATTTTTTATGATGATTTATCTAAACAA 13139 >seq1035 Length=208423 Score = 127 bits (140), Expect = 5e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || || || || |||| ||||| || | | || Sbjct 98353 ACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 98412 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| || || || ||||| || ||||| || Sbjct 98413 GCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCC 98472 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||||| || || ||| |||| || | || || || | Sbjct 98473 TTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAG 98532 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| ||||||||||||| ||| || | || | ||||| || Sbjct 98533 CGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 98577 >seq148 Length=18536 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || |||| ||||| || | | || | || || || |||||||| ||| Sbjct 18491 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTCGAGCTGCTTACCA 18432 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | || || || || || ||||||||||||||||| |||||||| ||||| Sbjct 18431 GCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTCTGCTTG 18372 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||||| | |||||| | || ||||| ||||| || |||||||| || | || Sbjct 18371 ACATTGTCGATCGAGTCTGAAGGCTCGACGTCCAACGTAATGGTCTTGCCGGTGAGTGTC 18312 Query 225697 TTTATGAACACTTGCATTTT 225716 || | ||| | ||||| || Sbjct 18311 TTGACGAAGATCTGCATCTT 18292 Score = 113 bits (124), Expect = 1e-19 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || || || || |||| ||||| || | | || Sbjct 99 ACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGT 158 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| |||||||| || | ||| || || || || ||||| || Sbjct 159 ACGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCTGGAGGAATGCC 218 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||||| || ||||| | ||| || | || ||||| | Sbjct 219 TTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAG 278 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || |||||||| ||||| || || | ||| | ||||| || Sbjct 279 AGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATCTT 323 >seq260 Length=11408 Score = 93.3 bits (102), Expect = 1e-13 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| || | ||||| ||| Sbjct 87 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAAAGG-CAG 29 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAA 6853 |||||| |||| || ||||||| ||||| Sbjct 28 CAGTGGGGAATTTTGGACAATGAGCGAA 1 >seq985 Length=4014 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/102 (80%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 6750 AGCCTTTTCCCTTTAACT----TGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGC 6804 ||||| || ||||| || ||| |||||||||||||||||||||||||| | ||||| Sbjct 3907 AGCCTATTATCTTTAGCTGGTTTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGC 3966 Query 6805 CCAAGTCTTCTAAAAGGGCAGCAGTGGAGAATATTTGACAAT 6846 |||| ||| | || ||||||||||| |||| || |||||| Sbjct 3967 CCAA-ACTTTTTTAAAGGCAGCAGTGGGGAATTTTGGACAAT 4007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192515263683842