Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq272 129 5e-25 >seq272 Length=54113 Score = 129 bits (142), Expect = 5e-25 Identities = 383/591 (65%), Gaps = 12/591 (2%) Strand=Plus/Plus Query 29638 CTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGAC 29697 ||| ||| | ||||| || | ||||| | ||||| ||| ||||| || | | ||||| Sbjct 10240 CTGGATCTTGAGCGGCTCGAGGTGGTTCAAGTAGATGTGTGCATCACCAATGACATGGAC 10299 Query 29698 AAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCT 29757 || || || | | ||||| | ||| ||||| |||| || | | | ||| || Sbjct 10300 GAAGTCACCGGCCTTGAGCCCAGCGACCTGAGCGATCAATCGGGTCAACAACGCGTAACT 10359 Query 29758 GGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGA 29817 |||||| ||||| ||||| ||||| |||||||| | || | |||||| | |||||||| Sbjct 10360 GGCGATATTAAACGGCACACCGAGGCCCATGTCAGCCGATCGCTGGTACATTTGGCACGA 10419 Query 29818 GAGCTCTCC-GTCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCA 29873 |||||| || |||| ||||| ||||| | ||||| |||||||||||||| |||| Sbjct 10420 GAGCTCGCCATTCGC-GACGTAGAACTGGCAGAACATG---TGGCACGGAGGAAGCGCCA 10475 Query 29874 TGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGT 29933 | | |||| || ||||| ||| ||| || || |||| ||| | |||||| Sbjct 10476 TCTCCTTGAGGTCTGCTGGATTCCATGCAGACAAGAGAATACGCCGGTCGTTCGGGTTGG 10535 Query 29934 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNN 29993 || | | || | | | | ||||||||||| ||| || | ||| || | Sbjct 10536 TCTTAAGCTTGTGGATGACCTCAGCGAGCTGATCCACACCCTGACCGGTGTAATCGGCGT 10595 Query 29994 NNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30053 | || || | ||||||||| || ||||| || || || | Sbjct 10596 GCATATCGGTATACTTGGCACCAAAGTGACGCCACTGGAAGCCATACACTGGACCGAGAT 10655 Query 30054 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30113 | || |||| | || ||| || | | || | | || | || || ||| ||| Sbjct 10656 CGCCTGCTTCGCGATGACCGAGACCGATGCTTTCTAGGTATTCCTTCGATCCATTGCCGT 10715 Query 30114 CCCAGATCTTTACCCCCTTCTC--GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30171 |||| || | | |||| || |||||| || |||| || ||| || |||| ||| Sbjct 10716 CCCAAATATGAATGTCCTTGTCCTGGAGAG-TC-TTGGCATTCGTGTCACCGCTGATGAA 10773 Query 30172 CCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30222 ||||| |||||| || | ||| | ||| || || | ||| |||||||| Sbjct 10774 CCACAACAGCTCTTCTGCAACGCCACGCCAGAACACGCGCTTCGTCGTGAG 10824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406158037031098