Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq272 159 3e-34 >seq272 Length=54113 Score = 159 bits (176), Expect = 3e-34 Identities = 389/583 (67%), Gaps = 6/583 (1%) Strand=Plus/Plus Query 27137 TCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACT 27196 |||| ||||| || | ||| | || ||||| ||| || || || | | ||||| || | Sbjct 10245 TCTTGAGCGGCTCGAGGTGGTTCAAGTAGATGTGTGCATCACCAATGACATGGACGAAGT 10304 Query 27197 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 27256 | || | | ||||| | ||| ||||| |||| || | | | ||| ||||||| Sbjct 10305 CACCGGCCTTGAGCCCAGCGACCTGAGCGATCAATCGGGTCAACAACGCGTAACTGGCGA 10364 Query 27257 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 27316 | ||||| || || ||||| |||||||| |||| | |||||| | || |||||||||| Sbjct 10365 TATTAAACGGCACACCGAGGCCCATGTCAGCCGATCGCTGGTACATTTGGCACGAGAGCT 10424 Query 27317 CTCCA-TCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCC 27375 | ||| |||| ||||| ||||| || | ||||||||||||||| ||||| Sbjct 10425 CGCCATTCGC-GACGTAGAACTGGCAGAACATGTGGCACGGAGGAAGCGCCATCTCCTTG 10483 Query 27376 AAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATG 27435 | |||| || ||||| || ||| || || |||| ||| | |||||| || | | Sbjct 10484 AGGTCTGCTGGATTCCATGCAGACAAGAGAATACGCCGGTCGTTCGGGTTGGTCTTAAGC 10543 Query 27436 AGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCC 27495 || | | | | ||||||||||| ||| || | ||| || | ||| || Sbjct 10544 TTGTGGATGACCTCAGCGAGCTGATCCACACCCTGACCGGTGTAATCGGCGTGCATATCG 10603 Query 27496 GTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCT 27555 || |||| || || || || | ||| ||||| || ||||| || || || || || || Sbjct 10604 GTATACTTGGCACCAAAGTGACGCCACTGGAAGCCATACACTGGACCGAGATCGCCTGCT 10663 Query 27556 TCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 27615 || | || ||| || | | || | | || | || || ||| ||||||| || Sbjct 10664 TCGCGATGACCGAGACCGATGCTTTCTAGGTATTCCTTCGATCCATTGCCGTCCCAAATA 10723 Query 27616 TTTACCCCCTTCTC--GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 27673 | | |||| || |||||| || |||| || ||| || |||| |||||||| || Sbjct 10724 TGAATGTCCTTGTCCTGGAGAG-TC-TTGGCATTCGTGTCACCGCTGATGAACCACAACA 10781 Query 27674 GCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 27716 |||| || | ||| | ||| || || | ||| |||||||| Sbjct 10782 GCTCTTCTGCAACGCCACGCCAGAACACGCGCTTCGTCGTGAG 10824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369502502986133