Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq549 132 7e-26 >seq549 Length=149600 Score = 132 bits (146), Expect = 7e-26 Identities = 394/603 (65%), Gaps = 11/603 (2%) Strand=Plus/Minus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 || || || || ||||| || ||||||||||| | ||| || | ||||| || || || Sbjct 88204 AAGCAGGCGAAGTCACAGTGGAGACCTTCATCACGACTGATAAGCTCGTTCGAGAAGCTG 88145 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||| || ||||| || |||||||| || | | ||| || || || ||| Sbjct 88144 AGGCCAGGCATGAGACCACGCTTCTTGAGCCAGAAGACCGAGCAGAACGAACCCGAGAAG 88085 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA---CTGGCTTCGTTG 48314 || || || || | ||| || || ||| | | | | ||| | || | | ||| || Sbjct 88084 AAGATACCCTCAATGGCAGCGAAGGCG--ACGACACGCTCAGCAAACGCGGCGTTCTCTG 88027 Query 48315 TGT--ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAG 48372 || ||| || | ||||| | |||||||||| || || || ||||| || || | Sbjct 88026 AGTCACACCAGCGGAGCGCCCAGTTGGCCTTCTTCTGCACGCATGGGATTGTCTCAATGG 87967 Query 48373 CATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 | || | ||| || || | ||| || | ||| || || || || || | Sbjct 87966 CGCGGAACAAGTGGTTCTTCTCGGCGGCATCCTTGATGTACGTGTCAATCAACAGCGAGT 87907 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 ||||||| ||||| || || ||||| || ||||| || ||||| || || | ||||| | Sbjct 87906 ACATTTCCGAGTGGATGTTCTCAATGGCAATCTGGAAGCCGTAGAAGCAGCGGGCTTCAG 87847 Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCA--GCCAAATTCTCATTTACTATTCCATCACT 48550 | ||| || || | | || ||||| || | ||||| || || || |||||||| Sbjct 87846 GCACCTGGACTTCGTTGCTGAA--GTTCATGGCAAGGTTCTCGTTCACAATACCATCACT 87789 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT 48610 ||||| || || || | || || || || || | || ||| |||| || | Sbjct 87788 GGCAGCGAAGAACGCGAGCACGTGCTTGATGAAGTGACGCTCATTGTCGGTCAAGTTGCT 87729 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 |||||| |||| || | | ||| | || || | ||||| || || || || Sbjct 87728 CCAGTCCTTGAGGTCGTGCACAAGATCGATCTCCTCGACCGTCCAGAAGCTGGCTTCCGC 87669 Query 48671 TTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGG 48730 || || ||||||| ||| || || | | ||||| ||||| | || |||| ||||| Sbjct 87668 CTTCTTGTACATATCCCAGATCTCCTTCTCCTGGATCGGGAAGAGCACGAATCGGTTTGG 87609 Query 48731 ATT 48733 || Sbjct 87608 GTT 87606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694659743255520