Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq393 89.7 2e-13 >seq393 Length=25462 Score = 89.7 bits (98), Expect = 2e-13 Identities = 188/274 (69%), Gaps = 6/274 (2%) Strand=Plus/Plus Query 31005 CCATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGA 31064 ||||||||||||| |||| || ||||| | |||||||||| | | | | Sbjct 16291 CCATGCACATGTGCGTGGCCTCGATCACCACGGCCACGCCCTTGGGCTGGATTACGCCCA 16350 Query 31065 ACAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACA 31124 | |||| ||| ||||| | || || || ||||| ||||||| || || | | ||| Sbjct 16351 TGATCGCGTTCGCAATCTGCTTGGTCAGGCGCTCCTGTACTTGCAATCGACGCGAAAACA 16410 Query 31125 TGTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGA 31184 |||| | ||| | |||||||||| |||| | ||||| |||||||| | | Sbjct 16411 CCTCCGAGATGCGCGCGAGCTTGCTCAAACCCAGCACTTTGCCGTTTGGAATGTACCCAA 16470 Query 31185 TCGTG-ACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCA-ATGTGAGTAGATGGGGAT 31242 | ||| ||| |||| || ||| | | |||||||||||| ||| ||||||| | || Sbjct 16471 T-GTGCACCTTGCCCGTGAAGGGCACCATGTGATGCTCGCACATG-GAGTAGAGGTCAAT 16528 Query 31243 GTCGCGCACCGTCACCATCTGGTCATG--CTTCT 31274 ||||||||| | ||||| | ||| || ||||| Sbjct 16529 GTCGCGCACGATGACCATTTCGTCGTGGTCTTCT 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187287280301248