Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1035 178 3e-39 seq148 168 1e-36 seq806 118 2e-21 seq561 113 9e-20 seq797 96.9 7e-15 >seq1035 Length=208423 Score = 178 bits (196), Expect = 3e-39 Identities = 180/232 (78%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || || || || || |||||||||||||| | Sbjct 98347 ACCACCACGAAGACGGAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGA 98406 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || ||||| ||||||| ||| || ||||| || Sbjct 98407 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGG 98466 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || |||||||| |||||||| ||| || ||| | || || ||||||| | |||| Sbjct 98467 AATTCCTTCCTTGTCCTGGATCTTCTGC-TTGACGTTGTCAATGCTGTCCGATGGCTCGA 98525 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | ||||| ||||| ||||| ||||||| |||||| || || |||||||| || Sbjct 98526 CATCGAGCGTGATGGTCTTGCCCGTCAGAGTCTTCACAAAGATCTGCATCTT 98577 >seq148 Length=18536 Score = 168 bits (186), Expect = 1e-36 Identities = 178/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || ||||| || || |||||||||||||| | Sbjct 93 ACCACCACGAAGGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGA 152 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || || || || ||||| || || || || || Sbjct 153 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCTGGAGG 212 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || |||||||| |||||||| ||| || ||| | ||||| | |||||||| |||| Sbjct 213 AATGCCTTCCTTGTCCTGGATCTTCTGC-TTGACGTTGTCGATCGAGTCCGAAGGCTCGA 271 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | |||||||| || ||||| || ||||| ||||| ||||| |||||||| || Sbjct 272 CGTCGAGAGTAATGGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATCTT 323 Score = 154 bits (170), Expect = 3e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||| ||| || |||| || ||||| || || |||||||||||||| | Sbjct 18522 ACCACCACGCAAGCGGAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGA 18463 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| ||||| || || || || |||||||||||||| || || || || Sbjct 18462 GAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGG 18403 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||||| |||||||| |||||||| ||| || || | ||||| | ||| |||| |||| Sbjct 18402 AATACCTTCCTTGTCCTGGATCTTCTGC-TTGACATTGTCGATCGAGTCTGAAGGCTCGA 18344 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | || | || || ||||| || || | ||||| ||||| |||||||| || Sbjct 18343 CGTCCAACGTAATGGTCTTGCCGGTGAGTGTCTTGACGAAGATCTGCATCTT 18292 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 283008 TGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGT 283066 |||||||| ||||| ||| | || || | |||||||| ||||| ||||| || || || Sbjct 1 TGGATCTTCTGCTTG-ACGTTGTCAATCGAGTCCGAAGGCTCGACGTCGAGGGTAATGGT 59 Query 283067 CTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||||| ||||| ||||| |||||||| Sbjct 60 CTTACCCGTCAACGTCTTCACGAAGATCTGCAT 92 >seq806 Length=732016 Score = 118 bits (130), Expect = 2e-21 Identities = 299/448 (67%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 273617 CGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGG 273676 ||| ||||| || || || || || || || |||| ||| | | || | ||||| Sbjct 455323 CGTCGACCACCCAGTACCGATGCCCTCTGAGCCGTTCAACAGCAGCATGGGCAAGATTGG 455264 Query 273677 GACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATC 273736 || || || | ||||| | | | ||||||||||| | ||| ||| ||| || || Sbjct 455263 TACGTAGTAGTGAGGCTCCACTGGGTAACCATCGTCGTCGACGTAGCTCAGCAACGCGTC 455204 Query 273737 ATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGC 273796 || || ||| | | | ||||| | | || |||||| ||||| | | Sbjct 455203 GTCGTCTTCTGGGAACAGCATACGCGTGTACTTCTGCAAGAACGTGAAGATGTAACGAGG 455144 Query 273797 ACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTC-GGGCAGTAGCC 273855 ||||||| ||||| ||||| || || | || ||| || |||||| ||| || ||| Sbjct 455143 ACTCGCAGCATCCTTACCACCCTGAAGTCGCGTACCGAATTGACCCGAAGGGTAG-AGCA 455085 Query 273856 AGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGG 273915 | | |||||| ||| ||||| ||||| ||||||||||| || || ||||| | Sbjct 455084 ATGGCAAGTTGTTCGCACCAACGTAGTCCTGCGCCATATTCACAATTGTTGAGTGAAGTG 455025 Query 273916 ATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA-TAACCACTGAACTGAGCAACC 273974 || | || |||||||| || || | || || | | | ||||| || ||| || ||| Sbjct 455024 ATGCTTCACCGTGGTGGTATGCCGTATGCTC-ACTACAGTAACCCGCGAGCTGCGCCACC 454966 Query 273975 TTCACATCGCTCGTCAAGTTTCGCTTGA---ATGCGGAATACAACACCTTCCGCTGCGAG 274031 || || || |||| | |||||||||| | ||| |||||||||| ||||| || Sbjct 454965 TTGACTTCCTTCGTGAGTTTTCGCTTGAGACAAGCG---AACAACACCTTACGCTGTGAT 454909 Query 274032 GGCTTGAACCCATCAACGACCGATGGAA 274059 ||||| ||||||| || ||||||| Sbjct 454908 ACCTTGAGACCATCAATAACGGATGGAA 454881 >seq561 Length=342854 Score = 113 bits (124), Expect = 9e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 316154 CAAGTGATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCA 316213 |||| |||| ||||| |||||||| ||||||| ||||||||||| |||| || | Sbjct 172354 CAAGCAATTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGAGA 172295 Query 316214 TGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATAT 316273 |||| | || || || |||||||||||||||||||| || |||||||| | ||| | Sbjct 172294 TGTCCAAGTGCTCTTCAATGTGGTGGAAAGCGTGCTGGGCGACGTAAGCGAAACGAAGGG 172235 Query 316274 TTGGATGCTTCCAAACGCTACC 316295 ||||||||||| ||| |||| Sbjct 172234 CAGGATGCTTCCACACGGTACC 172213 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 316986 GAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCTTCCAACTG 317045 ||||| |||||||| | | || || || ||||| | | ||||| || || | ||| Sbjct 171531 GAGGTTGTGCTCAACGAACACGGTCTTGAGCTCATCCTGCTTTGGGAAGCCCTCGAGCTG 171472 Query 317046 ACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACC 317105 ||| ||| || || | ||| || |||||||| ||| ||| || || || || ||||| Sbjct 171471 ACCCTTCGAGATGGCACGCATGAGCGTCGACTTACCACAACCGTTTGGACCACAGAGACC 171412 Query 317106 ATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATA 317165 || || | || ||| ||| || ||| | |||||| || | ||| ||||||| || Sbjct 171411 GTAACGGTGACCACGCTTGAGACGAAGACGAGCGTTGTTGAGCAAGATCATACCACCGTA 171352 Query 317166 TGCCAGAGAGAACTCACAATCACACAGGTC 317195 || || ||||||||||| | ||| || || Sbjct 171351 AGCGAGCGAGAACTCACAGTTACAGAGATC 171322 >seq797 Length=162424 Score = 96.9 bits (106), Expect = 7e-15 Identities = 280/431 (65%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 273621 GACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACA 273680 |||||||| || |||||||| | ||| || || |||| | ||||| | ||| ||| Sbjct 53267 GACCAACCAGTACCAATACCTTCACTACCGTTGACAAGAACCATTGGGATGACTGGAACA 53326 Query 273681 TAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCC 273740 || | || || || || | |||||| |||| |||||| || | | | | | |||| Sbjct 53327 TACCACTCAGGTTCGATCGATTGACCATCATCGTCAAGGTAGTTGAGAACATCGTTATCC 53386 Query 273741 GTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTC 273800 | |||| | ||| | |||| | || || ||||| ||||| | | || Sbjct 53387 AGTGGATCGAAGAGGCATCGAGCAAGAGGTTCGAGGTTGGTGAAGATGTAACGAGGGCTT 53446 Query 273801 GCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTT 273860 ||| ||||||||| || || | || ||| |||||||| | ||| ||| | || Sbjct 53447 GCACTGTCCTTGCCTCCCATCAATCGCGTACCGAACTGACCGTTTGGCGAGAGCAAATTG 53506 Query 273861 ATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACC 273920 ||||||||||| || ||| | || || ||||| || || || || || | | | || Sbjct 53507 ATGTTGTTGCTGCCCACGAAGTCTTGCGCCATGTTGACAATTGTACCGTAGATACTTGCC 53566 Query 273921 TCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTTCACA 273980 || ||||| || || || || || | || || || | | || || ||||| | Sbjct 53567 TCACCGTGATGGTAAGCCGAATGCTCCGAGACGTATCCTCCAAGTTGGGCGACCTTGATT 53626 Query 273981 TCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAAC 274040 || || ||| |||||| |||| | | | |||||| || || || ||||| || Sbjct 53627 TCCGTCTTCAGGTTTCGTTTGAGACAACAGAAGAGCACCTTACGTTGAGATGGCTTAAAA 53686 Query 274041 CCATCAACGAC 274051 ||||| || || Sbjct 53687 CCATCGACAAC 53697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046725211966122