Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20periplocum_20[genbank_20GCA_5F001922765.1_202016-12-28] 1,043 sequences; 35,886,464 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq148 156 3e-33 seq1035 127 1e-24 seq132 91.5 1e-13 >seq148 Length=18536 Score = 156 bits (172), Expect = 3e-33 Identities = 163/212 (77%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | ||| |||||| ||||||||||| || | ||| || |||| || Sbjct 18504 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTC 18445 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || ||||||||||||||||||||||||| ||| | ||||||||| ||| Sbjct 18444 GAGCTGCTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCCTTGTCCTG 18385 Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||||||||| || ||| | || | ||| | | || || |||| |||||| ||| Sbjct 18384 GATCTTCTGCTTGACATTGT--CGATCGAGTCTGAAGGCTCGACGTCCAACGTAATGGTC 18327 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| ||||| |||||||| ||||| Sbjct 18326 TTGCCGGTGAGTGTCTTGACGAAGATCTGCAT 18295 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | ||| |||||| ||||||||||| || | ||| || |||| || Sbjct 111 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGTCCTC 170 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || || || ||||| ||||||||||||| ||| | |||||||| ||| Sbjct 171 GAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTG 230 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||| | | | || | ||| | | || || || | ||||| ||||| Sbjct 231 GATCTTCTGCTTGACGTTGTCGATCGAGTCCGAAGGCTCGACGTCGAGAGTAATGGTCTT 290 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||||||||||| ||||| Sbjct 291 GCCGGTCAACGTCTTCACGAAGATCTGCAT 320 >seq1035 Length=208423 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | || |||||| ||||||||||| || | ||| ||| | || || Sbjct 98365 CACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCATCCTC 98424 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||||| ||||||||| |||| || | |||||||| ||| Sbjct 98425 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTG 98484 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||||||||| | | | ||| |||| | | || || || | ||| || ||||| Sbjct 98485 GATCTTCTGCTTGACGTTGTCAATGCTGTCCGATGGCTCGACATCGAGCGTGATGGTCTT 98544 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || |||||||| ||||| ||||| Sbjct 98545 GCCCGTCAGAGTCTTCACAAAGATCTGCAT 98574 >seq132 Length=57701 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/113 (79%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || || ||||||||| ||| ||||||||||| || ||| | ||| |||||| | | Sbjct 10039 AGACATACCTTCCTTGTCCTGGATCTTCTGCTTGACATTGT--CAATGCTGTCGGATGGT 10096 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || ||||| ||||||||||||||||||||||| ||||| Sbjct 10097 TCAACATCCAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 10149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359985823959531