Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq6597 123 4e-23 seq3347 116 7e-21 seq3998 100 5e-16 seq10515 86.0 1e-11 >seq6597 Length=2484 Score = 123 bits (136), Expect = 4e-23 Identities = 76/81 (94%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 272868 TATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCT 272927 ||||||||||||||| ||||||| ||||||| ||||||| ||||||||||| |||||||| Sbjct 1963 TATATGGTGGGCCCACCAGGACTCGAACCTGGGACCAAGGGATTATGAGTCCCCTGCTCT 1904 Query 272928 AACCAACTGAGCTATAGGCCC 272948 ||||||||||||||||||||| Sbjct 1903 AACCAACTGAGCTATAGGCCC 1883 >seq3347 Length=17785 Score = 116 bits (128), Expect = 7e-21 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 272865 TAGTATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGC 272924 ||| | ||||||||||||| ||||||||||||| ||||||| ||||||||||||| |||| Sbjct 346 TAGAAAATGGTGGGCCCAGTAGGACTTGAACCTACGACCAATCGATTATGAGTCGACTGC 287 Query 272925 TCTAACCAACTGAGCTATAGGCCC 272948 ||| |||||||||||||| ||||| Sbjct 286 TCTGACCAACTGAGCTATGGGCCC 263 >seq3998 Length=11755 Score = 100 bits (110), Expect = 5e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 ||||||||||| | ||||| ||||| | |||||| ||||||||||| ||||||||||| Sbjct 1853 TGGTGGGCCCACCTGGACTCGAACCAGGGACCAAAGGATTATGAGTCCTCTGCTCTAACC 1912 Query 272932 AACTGAGCTATAG-GCCCTTTT 272952 ||||||||||||| |||||||| Sbjct 1913 AACTGAGCTATAGTGCCCTTTT 1934 >seq10515 Length=708 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/80 (88%), Gaps = 4/80 (5%) Strand=Plus/Minus Query 272871 ATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAA-GCGATTATGAGTCGC-CTGCTCTA 272928 ||||| ||||| |||||||||||||| || ||||| ||| ||||||| ||| |||||||| Sbjct 328 ATGGTAGGCCCGGCAGGACTTGAACCCGCAACCAAAGCG-TTATGAG-CGCTCTGCTCTA 271 Query 272929 ACCAACTGAGCTATAGGCCC 272948 ||||| ||||||| |||||| Sbjct 270 ACCAATTGAGCTACAGGCCC 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896791380874480