Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq76 86.0 5e-12 seq194 82.4 6e-11 >seq76 Length=624063 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||||||| | | ||||| ||| | || |||||||| || || ||||| |||| | Sbjct 334104 CCACCTCGCAAGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 334045 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||||||||| || ||||| | || | | |||||| || ||| Sbjct 334044 AGCGTGCGGCCGTCCTCCAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 333985 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | |||||| ||||| || ||||| || || | ||| || ||| ||||| Sbjct 333984 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGACGGCTCGACA 333925 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || ||||| || | || ||||| || || ||||| Sbjct 333924 TCCAGAGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 333878 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||| |||| || || | ||||||| Sbjct 333859 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTC 333800 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || ||||| | || || | |||||| || ||| | |||||| ||||| Sbjct 333799 CAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 333740 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | ||| || ||| ||||| || | || || || || Sbjct 333739 GATCTTCTGCTTCACGCCGTCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTT 333680 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | || ||||| || || ||||| Sbjct 333679 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 333650 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || ||||||||||| || ||||| |||| || || | ||||||| Sbjct 335593 CACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTC 335534 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || ||||| | || || | |||||| || ||| | |||||| ||||| Sbjct 335533 CAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 335474 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | ||| || ||| ||||| || | || || || || Sbjct 335473 GATCTTCTGCTTCACGCCGTCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTT 335414 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | || ||||| || || ||||| Sbjct 335413 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 335384 >seq194 Length=468613 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||| |||| || || | ||||||| Sbjct 405259 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 405318 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| || || | |||||| ||||| Sbjct 405319 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 405378 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| ||||| | ||| || || |||||| || | ||| || || || Sbjct 405379 GATCTTCTGCTTTACGCCGTCGATCGTGTCCGAGGGCTCCACGTCCAAGGTGATCGTCTT 405438 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | || ||||| || || ||||| Sbjct 405439 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 405468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414505463919838