Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq76 87.8 1e-12 >seq76 Length=624063 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 |||||| || | || ||||| || || || ||||| || |||| || | ||| || Sbjct 333859 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTC 333800 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 || ||||| || || || | ||| |||||||| | ||| ||||| || || || Sbjct 333799 CAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 333740 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || || | ||||||||| || | ||||||||||| ||||| || Sbjct 333739 GATCTTCTGCTTCACGCCGTCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTT 333680 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || || || ||||| || |||||| Sbjct 333679 ACCCGTGAGGGTCTTGACGAAGATCTGCATG 333649 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| ||||| || ||||| || |||| || | ||| |||| ||||| || Sbjct 335580 GTGGACTCCTTTTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTCCCC 335521 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || | ||| |||||||| | ||| ||||| || || || ||| ||| || Sbjct 335520 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 335461 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | ||||||||| || | ||||||||||| ||||| || ||||| || || Sbjct 335460 ACGCCGTCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTTACCCGTGAGGGTC 335401 Query 33353 TTTACGAAAATTTGCATG 33370 || ||||| || |||||| Sbjct 335400 TTGACGAAGATCTGCATG 335383 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || || ||||| || |||| || | ||| |||| ||||| || Sbjct 333162 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTCCCC 333103 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || | ||| |||||||| | ||| ||||| || || || ||| ||| || Sbjct 333102 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 333043 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | ||||||||| || | ||||||||||| ||||| || ||||| || || Sbjct 333042 ACGCCGTCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTTACCCGTGAGGGTC 332983 Query 33353 TTTACGAAAATTTGCATG 33370 || ||||| || |||||| Sbjct 332982 TTGACGAAGATCTGCATG 332965 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || || ||||| || |||| || | ||| |||| ||||| || Sbjct 333390 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTCCCC 333331 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || | ||| |||||||| | ||| ||||| || || || ||| ||| || Sbjct 333330 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 333271 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | ||||||||| || | ||||||||||| ||||| || ||||| || || Sbjct 333270 ACGCCGTCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTTACCCGTGAGGGTC 333211 Query 33353 TTTACGAAAATTTGCATG 33370 || ||||| || |||||| Sbjct 333210 TTGACGAAGATCTGCATG 333193 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| || || || ||||| || |||| || | ||| |||| ||||| || Sbjct 333618 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTCCCC 333559 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTT 33292 || || | ||| |||||||| | ||| ||||| || || || ||| ||| || Sbjct 333558 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 333499 Query 33293 ACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTT 33352 || | ||||||||| || | ||||||||||| ||||| || ||||| || || Sbjct 333498 ACGCCGTCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTTACCCGTGAGGGTC 333439 Query 33353 TTTACGAAAATTTGCATG 33370 || ||||| || |||||| Sbjct 333438 TTGACGAAGATCTGCATG 333421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318725823245646