Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq194 91.5 1e-13 >seq194 Length=468613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| |||| || || |||||||||||||| Sbjct 406149 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCCAGCTGC 406208 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || || |||||||| || ||| | | |||||||||| || ||| Sbjct 406209 TTGCCGGCGAAGATCAACCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTC 406268 Query 48644 TGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || | || || || | | |||| || | || || || ||||| || Sbjct 406269 TGCTTTA-CGCCGTCGATCGTGTCCGAGGGCTCCACATCCAGGGTGATCGTCTTACCCGT 406327 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || |||||||| Sbjct 406328 GAGGGTCTTGACGAAGATCTGCAT 406351 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || | || || |||||||||||||| Sbjct 403565 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCCAGCTGC 403624 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| || ||| | || ||||||||| || ||| Sbjct 403625 TTGCCGGCGAAGATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTC 403684 Query 48644 TGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || | || || || | | |||| || | || || || ||||| || Sbjct 403685 TGCTTCA-CGCCGTCGATCGTGTCCGAGGGCTCCACATCCAGAGTGATCGTCTTACCCGT 403743 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || |||||||| Sbjct 403744 GAGGGTCTTGACGAAGATCTGCAT 403767 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || | || || |||||||||||||| Sbjct 403109 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGC 403168 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| || ||| | | ||||||||| || ||| Sbjct 403169 TTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTC 403228 Query 48644 TGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || | || || || | | |||| || | || || || ||||| || Sbjct 403229 TGCTTCA-CGCCGTCGATCGTGTCCGAGGGCTCCACATCCAGGGTGATCGTCTTACCCGT 403287 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || |||||||| Sbjct 403288 GAGGGTCTTGACGAAGATCTGCAT 403311 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || | || || |||||||||||||| Sbjct 405038 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGC 405097 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| || ||| | | ||||||||| || ||| Sbjct 405098 TTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTC 405157 Query 48644 TGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || | || || || | | |||| || | || || || ||||| || Sbjct 405158 TGCTTCA-CGCCGTCGATCGTGTCCGAGGGCTCCACGTCCAAGGTGATCGTCTTACCCGT 405216 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || |||||||| Sbjct 405217 GAGGGTCTTGACGAAGATCTGCAT 405240 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || | || || |||||||||||||| Sbjct 405266 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGC 405325 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| || ||| | | ||||||||| || ||| Sbjct 405326 TTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTC 405385 Query 48644 TGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || | || || || | | |||| || | || || || ||||| || Sbjct 405386 TGCTTTA-CGCCGTCGATCGTGTCCGAGGGCTCCACGTCCAAGGTGATCGTCTTACCCGT 405444 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || |||||||| Sbjct 405445 GAGGGTCTTGACGAAGATCTGCAT 405468 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || | || || |||||||||||||| Sbjct 408287 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGC 408346 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| || ||| | | ||||||||| || ||| Sbjct 408347 TTGCCGGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTC 408406 Query 48644 TGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || | || || |||| | ||| || | || || || ||||| || Sbjct 408407 TGCTTCA-CGCCGTCGATCGTGTCGGACGGCTCAACGTCAAGGGTGATCGTCTTACCCGT 408465 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || |||||||| Sbjct 408466 GAGGGTCTTGACGAAGATCTGCAT 408489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421182779195327