Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq194 95.1 1e-14 seq76 93.3 4e-14 >seq194 Length=468613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | ||| || ||||| || | ||| || || || ||| ||||| Sbjct 403330 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCGTCCTC 403389 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| |||||| | ||||| | | ||||| || || || || || || ||||| | Sbjct 403390 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTG 403449 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| |||||| | | | ||||| || | ||||| || || Sbjct 403450 GATCTTCTGCTTCACGCCGTCGATAGTGTCCGAGGGTTCGACATCCAAGGTGATCGTCTT 403509 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 403510 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 403541 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | ||||| ||||| || | ||| || || || ||| | ||||| Sbjct 403786 CACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 403845 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || || || || ||||| | Sbjct 403846 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 403905 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | | |||||||| | ||||| || || Sbjct 403906 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGTTCGACGTCCAAGGTGATCGTCTT 403965 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 403966 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 403997 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| || | ||||| || || || ||||| || ||| Sbjct 404858 TCCTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCGGGCGGGATACCCTCCTTG 404917 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||| ||| || ||| |||||| | | | ||||| || | ||||| Sbjct 404918 TCCTGGATCTTCTGCTTCACGCCGTCGATAGTGTCCGAGGGTTCGACATCCAAGGTGATC 404977 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || || || ||||||||||||| Sbjct 404978 GTCTTACCCGTGAGGGTCTTAACGAAGATCTGCATGC 405014 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | || || ||||| || | ||| || ||| || ||| | ||||| Sbjct 403558 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTC 403617 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || ||||| || ||||| | Sbjct 403618 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTG 403677 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | | || || || | ||||| || || Sbjct 403678 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACATCCAGAGTGATCGTCTT 403737 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 403738 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 403769 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | || || ||||| || | ||| || || || ||| | ||||| Sbjct 406142 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTC 406201 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| || | ||||| || || || || ||||| ||||| | Sbjct 406202 CAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTG 406261 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | | || || || | ||||| || || Sbjct 406262 GATCTTCTGCTTTACGCCGTCGATCGTGTCCGAGGGCTCCACATCCAGGGTGATCGTCTT 406321 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 406322 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 406353 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| |||||| | || | ||| | || || ||||| || | ||| || || | Sbjct 408035 CCGCCTCGCAATCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 408094 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||||||||||| || ||| | ||||| | | ||||| || || || Sbjct 408095 AGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 408154 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||| ||| || ||| ||||| | | | |||||| Sbjct 408155 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGTTCGACG 408214 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||| || || || || || || || || ||||||||||||| Sbjct 408215 TCCAAGGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGC 408263 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | || || ||||| || | ||| || || || ||| | ||||| Sbjct 405031 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 405090 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || || || || ||||| | Sbjct 405091 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 405150 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | | || ||||| | ||||| || || Sbjct 405151 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACGTCCAAGGTGATCGTCTT 405210 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 405211 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 405242 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | || || ||||| || | ||| || || || ||| | ||||| Sbjct 405259 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 405318 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || || || || ||||| | Sbjct 405319 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 405378 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | | || ||||| | ||||| || || Sbjct 405379 GATCTTCTGCTTTACGCCGTCGATCGTGTCCGAGGGCTCCACGTCCAAGGTGATCGTCTT 405438 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 405439 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 405470 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| || | ||||| || || || || || || ||| Sbjct 407879 TCCTCCAGCTGCTTGCCGGCGAAGATCAACCGCTGCTGGTCGGGTGGGATGCCCTCCTTG 407938 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||| ||| || ||| ||||| | | | || || || | ||||| Sbjct 407939 TCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACATCCAGAGTGATC 407998 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || || |||||||||||||||| Sbjct 407999 GTCTTACCCGTGAGGGTCTTGACAAAGATCTGCATGC 408035 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||| | || || ||||| || | ||| || || || ||| | ||||| Sbjct 408280 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 408339 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || || || || ||||| | Sbjct 408340 CAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 408399 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | || ||||||| ||||| || || Sbjct 408400 GATCTTCTGCTTCACGCCGTCGATCGTGTCGGACGGCTCAACGTCAAGGGTGATCGTCTT 408459 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 408460 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 408491 >seq76 Length=624063 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||| || | ||||||||| | || || ||||| || | ||| || || | Sbjct 334104 CCACCTCGCAAGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 334045 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||||||||||| || || | ||||| || | ||||| || || || Sbjct 334044 AGCGTGCGGCCGTCCTCCAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 333985 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||| ||| || ||| ||||| | | ||||| Sbjct 333984 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGACGGCTCGACA 333925 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||| || || || || || || || || ||||||||||||| Sbjct 333924 TCCAGAGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGC 333876 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||| || | ||||||||| | || || ||||| || | ||| || || | Sbjct 336066 CCACCTCGCAAGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 336007 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||||||| ||| || || ||||||| | | ||||| || || || Sbjct 336006 AGCGTGCGGCCGTCCTCCAACTGCTTCCCCGCAAAGATGAGACGCTGCTGGTCGGGGGGG 335947 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||| ||| || ||| ||||| | | ||||| Sbjct 335946 ATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATTGTGTCGGACGGCTCGACA 335887 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | ||||| || || || || || || || || ||||||||||||| Sbjct 335886 TCCAGGGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGC 335838 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| || || || ||| | ||||| Sbjct 333859 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTC 333800 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || | ||||| | | ||||| || || || || || || ||||| | Sbjct 333799 CAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 333740 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | |||||||| | ||||| || || Sbjct 333739 GATCTTCTGCTTCACGCCGTCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTT 333680 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 333679 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 333648 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 ||||||| || || | | || | ||||||||| | || || ||||| || | ||| Sbjct 338806 TTTTACATGCCACCGCGAAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTG 338747 Query 94832 TAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891 || || || ||| | ||||||| ||| || || ||||||| | | ||||| Sbjct 338746 TAGTCCGACAGCGTGCGGCCGTCCTCCAACTGCTTCCCCGCAAAGATGAGACGCTGCTGG 338687 Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951 || || || || ||||| ||||| | || || ||| ||| | ||| ||||| | Sbjct 338686 TCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTCACGCCATCGATTGTGTCGGAC 338627 Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | ||||| || | ||||| || || || || || || || || ||||||||||||| Sbjct 338626 GGCTCGACATCCAGGGTGATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGC 338569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448216520289720