Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq10258 165 1e-36 seq1316 132 8e-27 seq969 129 9e-26 seq1102 125 1e-24 seq89 125 1e-24 >seq10258 Length=737 Score = 165 bits (182), Expect = 1e-36 Identities = 198/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| |||||| || |||||||| || ||||||||||| || || Sbjct 407 CGCCAAGCGTCACCGCAAGGTTCTTCGGGACAACATCCAGGGCATCACCAAGCCGGCCAT 348 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || ||||| || || ||||| |||| || | |||| ||||||| Sbjct 347 CCGTCGTCTGGCGCGCCGTGGCGGTGTGAAGCGCATCTCCGGGCTCATCTACGAAGAGAC 288 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | ||||| ||| ||| ||| ||||| || ||| || || Sbjct 287 CCGTGGTGTGCTCAAGGTGTTCCTGGAGAACGTCATCAGGGATGCCGTCACCTACACTGA 228 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | || || || | ||||| || || Sbjct 227 GCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTGTACGCCCTCAAACGCCAGGG 168 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 ||| | | || || || || |||||| Sbjct 167 CCGCACCCTGTACGGCTTCGGTGGTTAAT 139 >seq1316 Length=126881 Score = 132 bits (146), Expect = 8e-27 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||||||||| || ||||| || || ||||| ||||| Sbjct 30601 CTCCGCGATAACATCCAGGGCATCACCAAGCCCGCGATCCGCCGCCTTGCTCGCCGTGGC 30660 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| ||| | |||| || |||| |||| || | ||| | ||| Sbjct 30661 GGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGACCCGTGGCGTCCTCAAGGTGTTC 30720 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || | || ||| |||||||||||| || ||||| || Sbjct 30721 CTGGAGAACGTCATCCGCGACTCGGTCACCTACACCGAGCACGCTCGCCGGAAGACCGTG 30780 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| |||||||| | || || || | || || || ||||| Sbjct 30781 ACCGCCATGGATGTGGTGTACGCCCTCAAGCGCCAGGGCCG 30821 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || ||||||||||| || ||||||||||| || || Sbjct 83623 CGCCAAGCGCCACCGCAAGGTACTCCGCGATAACATCCAGGGCATCACCAAGCCCGCGAT 83682 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| ||||| || || ||||| |||| ||| | |||| || |||| Sbjct 83683 CCGCCGCCTTGCTCGCCGTGGCGGTGTGAAGCGCATCTCGGGACTCATCTACGAGGAGAC 83742 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| || | || ||| ||||| Sbjct 83743 CCGCGGCGTCCTCAAGGTGTTCCTGGAGAACGTCATCCGCGACTCGGTCACCTACACCGA 83802 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || ||| ||||||| | || || || | || || || || Sbjct 83803 GCACGCTCGCCGGAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 83862 Query 16672 CCG 16674 ||| Sbjct 83863 CCG 83865 >seq969 Length=177659 Score = 129 bits (142), Expect = 9e-26 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || ||||| || || ||||| ||||| Sbjct 21688 CTTCGCGATAACATCCAGGGCATCACCAAGCCCGCGATCCGCCGCCTTGCTCGCCGTGGC 21629 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| ||| | |||| || |||| || | || | ||| | ||| Sbjct 21628 GGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGACCCGCGGCGTCCTCAAGGTGTTC 21569 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || | || ||| || ||||||||| || ||||| || Sbjct 21568 CTCGAGAACGTCATCCGCGACTCGGTCACCTACACTGAGCACGCTCGCCGGAAGACCGTG 21509 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || || | || || || ||||| | | || ||||| || Sbjct 21508 ACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTCGG 21450 >seq1102 Length=154684 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || ||||| || || ||||| ||||| Sbjct 20493 CTTCGCGATAACATCCAGGGCATCACCAAGCCCGCGATCCGCCGCCTTGCTCGCCGTGGC 20434 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| ||| | |||| || |||| || | || | ||| | ||| Sbjct 20433 GGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGACCCGCGGCGTCCTCAAGGTGTTC 20374 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || | || ||| || ||||| ||| || ||||| || Sbjct 20373 CTCGAGAACGTCATCCGCGACTCGGTCACCTACACTGAGCATGCTCGCCGGAAGACCGTG 20314 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || || | || || || ||||| | | || ||||| || Sbjct 20313 ACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTCGG 20255 Score = 120 bits (132), Expect = 5e-23 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || ||||| || || ||||| ||||| Sbjct 142462 CTTCGCGATAACATCCAGGGCATCACCAAGCCCGCGATCCGCCGCCTTGCTCGCCGTGGC 142403 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| ||| | |||| || |||| || | || | ||| | ||| Sbjct 142402 GGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGACCCGCGGCGTCCTCAAGGTGTTC 142343 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || | || ||| || |||||||| || ||||| || Sbjct 142342 CTGGAGAACGTCATCCGCGACTCGGTCACCTACACTGAGCACGCCCGCCGGAAGACCGTG 142283 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || || | || || || ||||| | | || ||||| || Sbjct 142282 ACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTCGG 142224 >seq89 Length=595177 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || ||||| || || ||||| |||||| Sbjct 65741 CTTCGCGATAACATCCAGGGCATCACCAAGCCCGCGATCCGCCGCCTCGCTCGCCGTGGT 65682 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| ||| | |||| || |||| || | || | ||| | ||| Sbjct 65681 GGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGACCCGCGGCGTCCTCAAGGTGTTC 65622 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || | || ||| || |||||||| || ||||| || Sbjct 65621 CTGGAGAACGTCATCCGCGACTCGGTCACCTACACTGAGCACGCCCGCCGGAAGACCGTG 65562 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || || | || || || ||||| | |||| || || || Sbjct 65561 ACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTTTACGGCTTCGG 65503 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || ||||| || || ||||| |||||| Sbjct 69611 CTTCGCGATAACATCCAGGGCATCACCAAGCCCGCGATCCGCCGCCTCGCTCGCCGTGGT 69552 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| ||| | |||| || |||| || | || | ||| | ||| Sbjct 69551 GGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGACCCGCGGCGTCCTCAAGGTGTTC 69492 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || | || ||| || |||||||| || ||||| || Sbjct 69491 CTGGAGAACGTCATCCGCGACTCGGTCACCTACACTGAGCACGCCCGCCGGAAGACCGTG 69432 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | || || || | || || || ||||| Sbjct 69431 ACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCG 69391 Score = 116 bits (128), Expect = 6e-22 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || ||||| || || ||||| ||||| Sbjct 91064 CTTCGCGATAACATCCAGGGCATCACCAAGCCCGCGATCCGCCGCCTTGCTCGCCGTGGC 91123 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| ||| | |||| || |||| || | || | ||| | ||| Sbjct 91124 GGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGACCCGCGGCGTCCTCAAGGTGTTC 91183 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || | || || || |||||||| || ||||| || Sbjct 91184 CTGGAGAACGTCATCCGCGACTCGGTCACGTACACTGAGCACGCCCGCCGGAAGACCGTG 91243 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || || | || || || ||||| | |||| || || || Sbjct 91244 ACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTTTACGGCTTCGG 91302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79063015030611