Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq2386 172 7e-38 seq444 84.2 3e-11 >seq2386 Length=46605 Score = 172 bits (190), Expect = 7e-38 Identities = 502/717 (70%), Gaps = 62/717 (9%) Strand=Plus/Plus Query 135610 CATCTGGGAAG---CTGCTTCTCTTGAT-GAGTGGCTATAT-AATGGTGGTCCTTATCAA 135664 ||| ||||||| ||||||| |||| || ||| |||| |||||||| ||||| ||| Sbjct 37255 CATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATGGTGG-CCTTACCAA 37313 Query 135665 CTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTC-TTACATGGGTCGCGAGTGGGAACT 135723 || | || ||||| ||| | || |||| ||||| || |||||||| || |||||| Sbjct 37314 TTAATCGTATTCCATTTCTTAATTGGTG-CTTCTTGTTGGATGGGTCGTGAATGGGAAA- 37371 Query 135724 CTCTTACCGACTG------GGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGT 135777 |||| | || | |||||||| ||||| || || || | ||| | | || Sbjct 37372 --CTTAGCTACGGTGTTTAGGTATGCGTCCTTGATGTTTCGTAGCATTCTCTGTCAA-GT 37428 Query 135778 TGCC-GCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGA-CAA-GGTTCTTTCAG-TG 135833 | | || ||| |||| || ||| | | ||||| || ||| ||| ||| |||| | || Sbjct 37429 AGACAGCAGCT-CTGCGGTATTC-TAATTTACCC-TTCGGATCAATGGTAGTTTCTGCTG 37485 Query 135834 ATGGTATGCCGCTTGGCATT--TCTGGAA-CTTTTAACTACATGCTTG-TTTTCCAG--G 135887 | ||||||| ||| ||| ||||| | | ||||||| |||| | | ||||||| | Sbjct 37486 ACGGTATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGGTTTTCCAAAAG 37545 Query 135888 CA-GAACACAACATTCTCATGCATCCT---TTCCACA-TGTTGGGAGTTGCTGGG-GTCT 135941 | ||||| ||| || | ||||| ||| ||||| | || || |||||||| || | Sbjct 37546 CTCGAACATAACTTT-TAATGCA-CCTGGATTCCATAATGGCTGGTGTTGCTGGATGTTT 37603 Query 135942 TCGGTGGTTCTCTGTTCTCTGCTAT-GCATGGATCT-CTTGTCACCTCTAGTCTTGTACG 135999 ||| ||||| | || |||||| |||||| ||| || || | || ||| | |||| Sbjct 37604 TCG-TGGTTATTATATCAGTGCTATCGCATGGTTCTTCTAGTAAT-TCAAGTTTAATACG 37661 Query 136000 TGAGACGAC-TGAGGTAGAATCCCAGAACTATGGTTACAAG-TTCGGTCA-AGA-AGAAG 136055 ||| |||| ||| || ||||| || || |||||||| ||||| || ||| ||||| Sbjct 37662 TGAAACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGACAGAGATAGAAG 37720 Query 136056 AGACTTACAACATTGTTGCTGCTCAT-GGTTACTTCGG--TCGTCTGATCTT--CCAATA 136110 | |||||||||||||| ||||| ||| |||||||| || ||| | ||||| || || Sbjct 37721 AAACTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAATCTTGCGCAGTA 37780 Query 136111 TGCG-TCGTT--CAACA-ACTCTCG-TTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTT 136165 | | ||| ||||| ||||| | | |||| || |||||||| || ||||||| Sbjct 37781 GCAGCTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC-GCATGGCCTGAA 37839 Query 136166 GTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAATGGATTC 136225 || || || ||||| | || | || || | ||| ||||| || ||| | ||||| || Sbjct 37840 GTTGGGATTTGGTTAACAGCTTTAGGTGT-TGTACTATGGCATTTAACTTAAATGG-TTT 37897 Query 136226 AACTTCAACCAGTCCATTGTATCTTCT-GAAGGTCGTGTACTCAACACCTGGGCAGA 136281 | ||| |||||||| ||||| | | |||||||||||| | | || ||||| || Sbjct 37898 AGCTTTAACCAGTCTGTTGTAGATAGTAGAAGGTCGTGTATTAACGACATGGGCTGA 37954 >seq444 Length=311324 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 123003 GGTGTAGTTCAGTGGTAGAACGCTATCCTTCCAAGTTAGATGTCGTCGGTTCGAGTCCGA 123062 |||||||||||||||||||||| | | | ||||| | ||||||||||||||| ||||| Sbjct 3933 GGTGTAGTTCAGTGGTAGAACGTCAGCTTCCCAAGCTGAATGTCGTCGGTTCGACTCCGA 3874 Query 123063 TCACCCGCT 123071 ||||||||| Sbjct 3873 TCACCCGCT 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627863388380800