Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq2386 150 3e-31 >seq2386 Length=46605 Score = 150 bits (166), Expect = 3e-31 Identities = 452/643 (70%), Gaps = 56/643 (9%) Strand=Plus/Plus Query 211842 CAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACAT 211901 ||||||||| |||||||| || | | ||||| ||| | || || || | || Sbjct 37296 CAATGGTGG-CCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGCTTCTTGTTGGAT 37354 Query 211902 GGGAAGACAGTGGGAA-CTTTCATACCGT--TTAGGTATGCGTCCTTGGATCTGT-GTTG 211957 ||| | | |||||| ||| ||| || |||||||||||||||| ||| | | || | Sbjct 37355 GGGTCGTGAATGGGAAACTTAGCTACGGTGTTTAGGTATGCGTCCTT-GATGTTTCGTAG 37413 Query 211958 CTTATTCAGCACCTGTA-TCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGG-TC- 212014 | | || | | ||| |||||||| | || ||||| || ||||||| ||||| || Sbjct 37414 CATTCTCTG-TCAAGTAGACAGCAGCTCT-GCGGTATT-CTAATTTACCC-TTCGGATCA 37469 Query 212015 AGGGTTCATTCT-CAGACGGTATGCCTTTAGGTAT--ATCAGG-AACATTCAACTTCATG 212070 | ||| |||| | |||||||||| || ||||| || || | |||| ||||||||| Sbjct 37470 ATGGTAGTTTCTGCTGACGGTATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATG 37529 Query 212071 TTC-GTATTCC--AAGC-AGAACATAACATCCTTATGCACC--CATTCCAT-ATGGCAGG 212123 || || |||| |||| ||||||||| | | ||||||| ||||||| ||||| || Sbjct 37530 ATCGGTTTTCCAAAAGCTCGAACATAAC-TTTTAATGCACCTGGATTCCATAATGGCTGG 37588 Query 212124 TGTTGCAGGTATG-TTCGGTGGAGCATTAT-TCTCTGCTAT-GCACGGTTC-TCTTGT-- 212177 |||||| || ||| || |||| ||||| || |||||| ||| ||||| ||| || Sbjct 37589 TGTTGCTGG-ATGTTTTCGTGG-TTATTATATCAGTGCTATCGCATGGTTCTTCTAGTAA 37646 Query 212178 TACATCTTCACTTATCCGTGAAAC-CACTGGTTTAGATTCACAGAACTATGGTTAC-AAG 212235 | || || | || |||||||| | || | || || || || |||||| || Sbjct 37647 TTCAAGTT---TAATACGTGAAACGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAA 37702 Query 212236 TTCGGACA-AGA-AGAAGAGACATATAACATCGTTGCTGCACAT-GGATACTTCGGTAGA 212292 |||||||| ||| |||||| || || ||||| || ||||||||| || ||||| || | Sbjct 37703 TTCGGACAGAGATAGAAGAAACTTACAACATTGTAGCTGCACATAGGTTACTTTGGGTGC 37762 Query 212293 CTT--ATCTT--CCAGTATGCATC-ATTCAACAACAG----CAGAAG-TTTACACTTCTT 212342 || ||||| ||||| ||| | | | ||||||| ||| | |||||| ||||| Sbjct 37763 GTTTAATCTTGCGCAGTA-GCAGCTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTT 37821 Query 212343 CCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGC 212402 ||| || ||||||||| | | | |||||||| || | ||| | || || ||||| Sbjct 37822 CCTTGC-GCATGGCCTGAAGTTGGGATTTGGTTAACAGCTTTAGGTGT-TGTACTATGGC 37879 Query 212403 ATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 ||| ||| ||||||| || | ||| ||||| || ||||| ||| Sbjct 37880 ATTTAACTTAAATGG-TTTAGCTTTAACCAGTCTGTTGTAGAT 37921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807420671398120