Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq32 104 5e-17 seq2443 89.7 1e-12 seq1205 89.7 1e-12 seq106 89.7 1e-12 seq46 89.7 1e-12 seq1414 87.8 4e-12 seq1005 87.8 4e-12 seq529 87.8 4e-12 seq344 87.8 4e-12 seq326 87.8 4e-12 seq13 87.8 4e-12 >seq32 Length=779375 Score = 104 bits (114), Expect = 5e-17 Identities = 131/178 (74%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 280185 AATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC--CAGGCCACTG 280242 || || ||||| ||||| ||| | ||||| ||| |||| |||||| | | || | Sbjct 670485 AACGGGGCGGGGAAGTCGACCATGATCAAGGTCTTGACGGGCGAGGTCGTCCCGCAAACC 670544 Query 280243 AGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCC 280302 | | | || ||| ||||||||| ||| |||||||| | || ||||||||||||| Sbjct 670545 GGCGAT--GTCTGGCGGCATCCCAATGCGCGCGTGGCTTACCTGGCCCAGCACGCTTTCC 670602 Query 280303 ACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTATGC 280360 ||||||||||| ||||| || ||| ||| || ||| | ||||| | ||||| ||||| Sbjct 670603 ACCACATCGAGGACCACATGAACAGGACGCCGAACGAGTACATCCGATGGCGGTATGC 670660 >seq2443 Length=44302 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 17900 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 17959 Query 142563 CCCC 142566 |||| Sbjct 17960 CCCC 17963 >seq1205 Length=142520 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 51738 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 51679 Query 142563 CCCC 142566 |||| Sbjct 51678 CCCC 51675 >seq106 Length=564583 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 541287 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 541346 Query 142563 CCCC 142566 |||| Sbjct 541347 CCCC 541350 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 546141 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 546200 Query 142563 CCCC 142566 |||| Sbjct 546201 CCCC 546204 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 555387 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 555446 Query 142563 CCCC 142566 |||| Sbjct 555447 CCCC 555450 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 555804 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 555863 Query 142563 CCCC 142566 |||| Sbjct 555864 CCCC 555867 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 557897 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 557956 Query 142563 CCCC 142566 |||| Sbjct 557957 CCCC 557960 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 542566 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 542511 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 543137 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 543192 >seq46 Length=708191 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 382806 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 382865 Query 142563 CCCC 142566 |||| Sbjct 382866 CCCC 382869 >seq1414 Length=117077 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 37154 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 37209 >seq1005 Length=170773 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 133732 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 133677 >seq529 Length=282465 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 106231 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 106176 >seq344 Length=359845 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 43748 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 43803 >seq326 Length=366578 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 93122 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 93177 >seq13 Length=1084753 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 217836 CTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGC 217895 |||||| ||||||||||| ||||||||||| || || ||||| | || |||| Sbjct 51054 CTGCACGCTCATCCTGACCGAGGGAGACTCTGCCAAAACACTGGCCGTTTCGGGGCTTGG 50995 Query 217896 CGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCG 217955 |||||| || || || | ||| || | |||||||| || ||||||||||||||||| Sbjct 50994 CGTGGTTGGGCGGGACAAGTACGGGGTGTTCCCCCTGAAGGGAAAGCTGCTCAACGTGCG 50935 Query 217956 CGATGC 217961 ||| || Sbjct 50934 CGAGGC 50929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027661294618007