Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq194 96.9 3e-15 seq76 91.5 1e-13 >seq194 Length=468613 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 |||||| || || || |||||||| || || || || || || || || || || Sbjct 403798 CGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCC 403857 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| |||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 403858 GGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 403917 Query 114305 TA-GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAG 114363 | || || | || |||| | || ||||||||||| ||| | ||| || || || || | Sbjct 403918 CACGCCGTCGATCG-TGTCCGAGGGTTCGACGTCCAAGGTGATCGTCTTACCCGTGAGGG 403976 Query 114364 TTTTTACAAAAATCTGCATG 114383 | || || || ||||||||| Sbjct 403977 TCTTGACGAAGATCTGCATG 403996 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || ||| || || || || || || Sbjct 403343 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCGTCCTCCAGCTGCTTTCCG 403402 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 403403 GCGAAGATGAGACGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 403462 Query 114306 A-GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | || | || | ||||| | || |||||| |||| ||| | ||| || || || || || Sbjct 403463 ACGCCG-TCGATAGTGTCCGAGGGTTCGACATCCAAGGTGATCGTCTTACCCGTGAGGGT 403521 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 403522 CTTGACGAAGATCTGCATG 403540 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || ||| || || || || || || Sbjct 408065 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCGTCCTCCAGCTGCTTGCCG 408124 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 408125 GCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 408184 Query 114306 A-GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | || || | || |||| | || ||||||||||| ||| | ||| || || || || || Sbjct 408185 ACGCCGTCGATCG-TGTCCGAGGGTTCGACGTCCAAGGTGATCGTCTTACCCGTGAGGGT 408243 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 408244 CTTGACGAAGATCTGCATG 408262 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || || || || || || || Sbjct 408293 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 408352 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 408353 GCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 408412 Query 114306 A-GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | || | || | ||||||| | || ||||| | ||| | ||| || || || || || Sbjct 408413 ACGCCG-TCGATCGTGTCGGACGGCTCAACGTCAAGGGTGATCGTCTTACCCGTGAGGGT 408471 Query 114365 TTTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 408472 CTTGACGAAGATCTGCATGCCT 408493 >seq76 Length=624063 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| |||||||| || || || || || || || || || || Sbjct 335580 GTGGACTCCTTTTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTCCCC 335521 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 335520 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 335461 Query 114306 A-GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | || | || | ||||||| | |||||||||| || | ||| || || || || || Sbjct 335460 ACGCCG-TCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTTACCCGTGAGGGT 335402 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 335401 CTTGACGAAGATCTGCATG 335383 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || || || || || || || Sbjct 333162 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTCCCC 333103 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 333102 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 333043 Query 114306 A-GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | || | || | ||||||| | |||||||||| || | ||| || || || || || Sbjct 333042 ACGCCG-TCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTTACCCGTGAGGGT 332984 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 332983 CTTGACGAAGATCTGCATG 332965 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || || || || || || || Sbjct 333390 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTCCCC 333331 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 333330 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 333271 Query 114306 A-GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | || | || | ||||||| | |||||||||| || | ||| || || || || || Sbjct 333270 ACGCCG-TCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTTACCCGTGAGGGT 333212 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 333211 CTTGACGAAGATCTGCATG 333193 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || || || || || || || Sbjct 333618 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTCCCC 333559 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 333558 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 333499 Query 114306 A-GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | || | || | ||||||| | |||||||||| || | ||| || || || || || Sbjct 333498 ACGCCG-TCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTTACCCGTGAGGGT 333440 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 333439 CTTGACGAAGATCTGCATG 333421 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || || || || || || || Sbjct 333846 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTCCCC 333787 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 333786 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 333727 Query 114306 A-GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | || | || | ||||||| | |||||||||| || | ||| || || || || || Sbjct 333726 ACGCCG-TCGATCGTGTCGGACGGCTCGACGTCCAGAGTGATCGTCTTACCCGTGAGGGT 333668 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 333667 CTTGACGAAGATCTGCATG 333649 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || || || | || || || Sbjct 335808 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAACTGCTTCCCC 335749 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || |||||||| ||||| ||||| || || Sbjct 335748 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTC 335689 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | || | ||||||| | ||||| |||| ||| | ||| || || || || || Sbjct 335688 ACGCCATCGATTGTGTCGGACGGCTCGACATCCAGGGTGATCGTCTTACCCGTGAGGGTC 335629 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 335628 TTGACGAAGATCTGCATG 335611 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || || || | || || || Sbjct 336036 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAACTGCTTCCCC 335977 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| ||||| || || |||||||| ||||| ||||| || || Sbjct 335976 GCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTC 335917 Query 114306 A-GCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | || | || | ||||||| | ||||| |||| ||| | ||| || || || || || Sbjct 335916 ACGCCG-TCGATTGTGTCGGACGGCTCGACATCCAGGGTGATCGTCTTACCCGTGAGGGT 335858 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 335857 CTTGACGAAGATCTGCATG 335839 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || || || | || || || Sbjct 338083 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAACTGCTTCCCC 338024 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || |||||||| ||||| ||||| || || Sbjct 338023 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTC 337964 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | || | ||||||| | ||||| |||| ||| | ||| || || || || || Sbjct 337963 ACGCCATCGATTGTGTCGGACGGCTCGACATCCAGGGTGATCGTCTTACCCGTGAGGGTC 337904 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 337903 TTGACGAAGATCTGCATG 337886 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || || || | || || || Sbjct 338311 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAACTGCTTCCCC 338252 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || |||||||| ||||| ||||| || || Sbjct 338251 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTC 338192 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | || | ||||||| | ||||| |||| ||| | ||| || || || || || Sbjct 338191 ACGCCATCGATTGTGTCGGACGGCTCGACATCCAGGGTGATCGTCTTACCCGTGAGGGTC 338132 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 338131 TTGACGAAGATCTGCATG 338114 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || || || | || || || Sbjct 338539 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAACTGCTTCCCC 338480 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| ||||| || || |||||||| ||||| ||||| || || Sbjct 338479 GCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTCTGCTTC 338420 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | || | ||||||| | ||||| |||| ||| | ||| || || || || || Sbjct 338419 ACGCCATCGATTGTGTCGGACGGCTCGACATCCAGGGTGATCGTCTTACCCGTGAGGGTC 338360 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 338359 TTGACGAAGATCTGCATG 338342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420066160589124