Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5475 105 1e-17 seq85 87.8 3e-12 seq821 84.2 4e-11 >seq5475 Length=4812 Score = 105 bits (116), Expect = 1e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | | |||||||| ||| ||||| ||||||||||| | ||||||| ||| Sbjct 3790 ACCTCGTCGGGGGCGGTGTACTCGACGATCTCCGTGCAGAGGTTGGAGGACTTGATCGTG 3731 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 ||||||| || || ||| |||| |||||| ||||||||||| |||||| |||| Sbjct 3730 CCCAGGTTCTTCTGGTTGCTCTTGAAGTTGCACGCGTCCTTGTACAGCATGTAGGGAGTT 3671 Query 244826 CCGGTCTC 244833 |||||||| Sbjct 3670 CCGGTCTC 3663 >seq85 Length=604401 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | || |||||||| || || ||||||||||| || | ||||| ||| Sbjct 522795 ACCTCGTCGGGGTCGGTGTACTCGATGATTTCGGTGCAGAGATTGGACGATTTGATCGTG 522736 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 ||||||| || || ||| |||| |||||| ||||||||| | |||||| | ||| | Sbjct 522735 CCCAGGTTCTTCTGGTTGCTCTTGCTGTTGCACGCGTCCTTGAAAAGCATGTACGGCGTC 522676 Query 244826 CCGGTCTC 244833 || ||||| Sbjct 522675 CCCGTCTC 522668 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/158 (73%), Gaps = 8/158 (5%) Strand=Plus/Minus Query 243995 TCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCAC 244054 |||| ||||||||||||||||| || | |||||| |||| | || | || | |||| Sbjct 529416 TCGACGTTCTGCACCGAGCCCTGGTCGGCGATGATCTGGTTTCGGACTGTAGCAGTCCAG 529357 Query 244055 AGGCCCAAGCGCTCC---AGCGCCTCG-ACCAGGTGCCTGTTCACCACCTGAAACTCTCC 244110 |||||| |||| | || | |||| | |||||| ||||||| || ||||||||| Sbjct 529356 AGGCCC---CGCTGCGTGAG-GTCTCGCAAAAGGTGCTTGTTCACTACAGCAAACTCTCC 529301 Query 244111 CGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCG 244148 || |||||| | || | ||| | |||||||| |||| Sbjct 529300 CGCCAGCACCCTCCGGTTGTACATGTTGCTGCAAAGCG 529263 >seq821 Length=203339 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 244682 ACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTG 244741 ||||| ||| |||||| || |||||||| | | || |||||| | || || || ||| Sbjct 100026 ACGCTCCCCAAGTTGCACACCGCCACCTCTCCAGGGTCGGTGTATTCCACTATTTCCGTG 100085 Query 244742 CAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCG 244801 |||||||| | ||| ||| || || |||||||||||||||| ||| || || ||| Sbjct 100086 CAGAGGTTCGAGGACTGGATCGTCCCTAGGTGCTGGTGATTGGTCTTACGATTACACGCG 100145 Query 244802 TCCT 244805 |||| Sbjct 100146 TCCT 100149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944181884893520