Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq194 86.0 5e-12 >seq194 Length=468613 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||||||||| |||||||| || | || || Sbjct 403778 AGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 403837 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || ||||| |||||||| || ||| | || ||| Sbjct 403838 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCC 403897 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 403898 TTGTCCTGGATCTTCTGCTT 403917 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || | || || Sbjct 405023 AGGCGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 405082 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || ||||| |||||||| || ||| | || ||| Sbjct 405083 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCC 405142 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 405143 TTGTCCTGGATCTTCTGCTT 405162 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || | || || Sbjct 405251 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 405310 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || ||||| |||||||| || ||| | || ||| Sbjct 405311 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCC 405370 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 405371 TTGTCCTGGATCTTCTGCTT 405390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || || || || || ||||| ||| ||||||||| |||||||| || | | Sbjct 408035 CCGCCTCGCAATCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 408094 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||||||||| || ||||| |||||||| || ||| Sbjct 408095 AGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGG 408154 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 408155 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 408183 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || || ||| ||||||||| |||||||| || | || || Sbjct 403094 AGGCGAAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 403153 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || ||||| |||||||| || ||| | || ||| Sbjct 403154 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCC 403213 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 403214 TTGTCCTGGATCTTCTGCTT 403233 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || | || || Sbjct 408272 AGGCGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 408331 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || || |||||||| || ||| | || ||| Sbjct 408332 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCC 408391 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 408392 TTGTCCTGGATCTTCTGCTT 408411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396997908008254