Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq185 127 2e-24 seq1406 107 2e-18 seq85 93.3 5e-14 seq3056 91.5 2e-13 seq436 84.2 3e-11 >seq185 Length=475507 Score = 127 bits (140), Expect = 2e-24 Identities = 278/410 (68%), Gaps = 10/410 (2%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || |||||||| ||||||||||| ||||| || || ||||| || || Sbjct 208922 CGGTCGAAGCGCCCGGGGCGGAGCAGGGCGTCGTCGAGGATGTCGATACGGTTAGTGGCG 208863 Query 10847 GCGATGACAACGATGCCCG---TCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGA 10903 || ||||| | | ||| | || || | ||||| |||||||| || | || Sbjct 208862 GCCATGACGATCACGCCAGGGTTCCCG---ACGAAGCCGTCCATCTCCACCAGCATCTGG 208806 Query 10904 TTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGC-ACTGCGTTGCTTACC 10962 |||| ||| || ||||| || || || || | || | |||| | |||||| || Sbjct 208805 TTGAGGGTCTGCTCGCGCTCGTCGTT-GCCGCCAGCCATGCCGCTGCCACGTTGCCGGCC 208747 Query 10963 GACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAA 11022 |||||||| || || |||||||| | ||| ||||| || || || || || Sbjct 208746 AACGGCGTCGATCTCGTCGATGAAGATGATGCACGGCGAGTTCTCCTTCGCCTTGTCGAA 208687 Query 11023 GATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGA 11082 | || || || | | |||||| || || || ||||| ||||| || | || | | Sbjct 208686 CAAGTCGCGCACACGCGCGGCACCCACGCCGACGAACATCTCCACGAACTCGGACCCAG- 208628 Query 11083 ACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 11141 || | | ||||||||||||| | || || || | ||| || |||| ||| ||||| | Sbjct 208627 ACGTGGCGATGAAGGGGACGCCCGCCTCGCCGGCCACGGCCCGCGCGATGAGCGTCTTAC 208568 Query 11142 CCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 11191 | ||||| || ||| | || | | ||||| |||||| |||||||| Sbjct 208567 CGGTCCCGGGAGGACCTTCCAGGATCACGCCACGGGGGATCTTGGCACCA 208518 >seq1406 Length=118068 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 115110 TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCG 115169 |||| || ||||||||||| ||| ||| |||| | | || ||||||||||||| Sbjct 75278 TGAGCGTGTCGTAGATCCCGGAGATGCTGTCCTCCTTCATGGTGAGCAGGAAGCAGCTCG 75219 Query 115170 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 115229 |||| || ||| | || || || |||||||||||||| || || |||||| |||| | | Sbjct 75218 ACATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGGGTGAAGAGCC 75159 Query 115230 CTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGA 115289 |||||||| ||||| ||||| | ||| | |||| ||| ||| || || | Sbjct 75158 GCTGGGACATGAGGTCGTACGTCTCGATGACCTTGTCGATGTTCTCCTTGTGGATGCCCA 75099 Query 115290 TCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCA 115328 ||| || ||||| | ||||| || || | |||| || Sbjct 75098 CCGACACGCGCATGATCATGTGCTGCGGCCTCTCCACCA 75060 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||| | ||||| | || ||| ||||| |||||||| || ||||| ||||| ||||||||| Sbjct 85478 GTGAAGGGCTCGACGCTCTCGTTGTTGCCCAAGATCTGCGCGGTCGAGGCCGTGGGCATG 85419 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073 || |||| || ||| ||| | ||||| | || || | |||| ||| | || Sbjct 85418 GGCGCCACCAGGAGGGAGTTCCTCAGACCGTGCTCGGCCATTCTCGCCTTAAGGCCCGCC 85359 Query 114074 CAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAG 114133 ||||||| || | | || || ||| | || |||||||||| ||| | ||| Sbjct 85358 CAGTCGTGCCTGTCGGTGGGCTTGACCCCCCAGAGGTCGAACTGGAGGAGACCCTCCGAG 85299 Query 114134 GCTGGCGATCCCTCAAATGTCTCGTATGGGCCC 114166 || || || || | | |||||||| || ||| Sbjct 85298 GCAGGGGAGCCAGCGTAGGTCTCGTAGGGTCCC 85266 >seq85 Length=604401 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 114509 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 114568 || |||||||| || ||||| || || | ||| || || || ||||||| |||||| Sbjct 522783 TCGGTGTACTCGATGATTTCGGTGCAGAGATTGGACGATTTGATCGTGCCCAGGTTCTTC 522724 Query 114569 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 114624 || || ||| |||| ||||| |||||| |||||||||| |||||||||||||| Sbjct 522723 TGGTTGCTCTTGCTGTTGCACGCGTCCTTGAAAAGCATGTACGGCGTCCCCGTCTC 522668 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 113565 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 113624 ||||||| |||| |||| | | ||||| |||||||||||||| |||||||| || | Sbjct 531586 TGAACTGGATGGCGTGCGCCCTCGGCTTTGTGCGGAGGTAGTACATGCCCGTCTTCAGGC 531527 Query 113625 CCTGCTTCCAGGCATACATATGCATCGAGGACAACTTG 113662 ||| |||||| || || | |||||||||| || |||| Sbjct 531526 CCTTCTTCCACGCGTAGAAGTGCATCGAGGTCAGCTTG 531489 >seq3056 Length=22768 Score = 91.5 bits (100), Expect = 2e-13 Identities = 262/386 (68%), Gaps = 14/386 (4%) Strand=Plus/Plus Query 10765 GGGTAGGGACACGGTGATCTTACGA-TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAA 10823 ||| |||| |||| ||||| || || ||||| || |||||| ||| ||| ||| | Sbjct 9128 GGGGAGGGG-ACGGCGATCTGGCGCGTCGAAGCGGCCGCGGCGGACGAGTGCGG-GTCGA 9185 Query 10824 GGATATCAATGCG-GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA-AAGCC 10881 ||| || ||| ||| || || |||||||| | || ||| ||| | | | ||||| Sbjct 9186 GGACGTCGC-GCGCGTTGGTGGCGGCGATGACGATGACGCC-GTCGCCGGAGCCGAAGCC 9243 Query 10882 ATCCATCTCAGTCAAGAGTTGA-TTGATGGTTTGTTCGCGTTCATCATTCGCGGGCAT-- 10938 |||||||| | | || | | |||| ||| || |||||||| || | | || | Sbjct 9244 GTCCATCTC-GACGAGGATGGCGTTGAGGGTCTGCTCGCGTTCGTCGTGCCCGCCCTGTG 9302 Query 10939 ACCACCCGCA-CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACG 10997 | |||||| | ||| | ||||||||||| || ||||||| ||| | ||| |||| Sbjct 9303 AGAACCCGCCGCCGCGGCGGCGGCCGACGGCGTCGATCTCATCGAGGAAGATGATGCACG 9362 Query 10998 GTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAA 11057 | || || ||| | |||| || ||||| | ||| ||||| || || | Sbjct 9363 GGGCGTTGTCCTTGGCCTGCTTGAAGAGGTCGCGGACGCGGGAGGCGCCGACGCCGACGA 9422 Query 11058 ACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCG 11116 |||| || || || | || | |||| || | || ||||||||||| || || || ||| Sbjct 9423 ACATCTCGACGAAGTCGGAGCCGGAG-ATGGAGAAGAAGGGGACGTCGGCCTCGCCGGCG 9481 Query 11117 ATGGCTCGGGCGAGGAGGGTCTTCCC 11142 || ||| |||||||||||| || || Sbjct 9482 ATTGCTTTGGCGAGGAGGGTTTTGCC 9507 >seq436 Length=314818 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| ||| |||||| || || ||||||||| || |||||||| ||||||||| Sbjct 92592 CCCTCGTCGCGGCTGATGAGCTCGTTGCTGAAGCACAGCCCCGGCATGAGTCCCCGCTTC 92533 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 |||| |||||| | || || || ||||| ||||| || |||| Sbjct 92532 TTCAGCCAGAACACGGCGCAGAAGCTTCCCGAAAAGAAAATACCCT 92487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597254088357160