Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_011811.1 Length=84576 Score E Sequences producing significant alignments: (Bits) Value seq8312 84.2 1e-11 seq5349 84.2 1e-11 >seq8312 Length=1178 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 22491 GCGGGATGGAGCAGT--GGTAGCTTGCCAGTTTCATTATCTGGAGGTCGTAGGTTCGAAT 22548 ||||||||||||||| ||||||| | ||| |||| | ||| ||||||||||||| ||| Sbjct 580 GCGGGATGGAGCAGTCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 639 Query 22549 CCTACTCCCGCTTCCAAA 22566 ||||||||||| ||||| Sbjct 640 CCTACTCCCGCAACCAAA 657 >seq5349 Length=5186 Score = 84.2 bits (92), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 22486 TTATAGCGGGATGGAGCAGT--GGTAGCTTGCCAGTTTCATTATCTGGAGGTCGTAGGTT 22543 |||| |||||||||||||| ||||||| | ||| |||| | ||| |||||||||||| Sbjct 3684 TTATCGCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTT 3743 Query 22544 CGAATCCTACTCCCGCTTCCAAA 22566 | |||||||||||||| ||||| Sbjct 3744 CAAATCCTACTCCCGCAACCAAA 3766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 270474461640639