Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq2386 161 1e-34 seq4353 86.0 8e-12 seq3525 82.4 9e-11 >seq2386 Length=46605 Score = 161 bits (178), Expect = 1e-34 Identities = 496/713 (70%), Gaps = 52/713 (7%) Strand=Plus/Minus Query 7612 GTCTGCCCAGGTGTTCAGGACACGACCTTG-ACCATCAATGATGGACTGGTTGAAGTTGA 7670 ||| ||||| || | | |||||||||| || ||| | | |||||||| ||| | | Sbjct 37955 GTCAGCCCATGTCGTTAATACACGACCTTCTACTATCTACAACAGACTGGTTAAAGCT-A 37897 Query 7671 AACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAA 7730 |||| || | ||| |||||||| || | |||||| | ||| || ||||| || ||||| Sbjct 37896 AACCATTTAAGTTAAATGCCATAGTAC-AACACCTAAAGCTGTTAACCAAATCCCAACTT 37838 Query 7731 CTGGCCATGCTGCGAGGAAGAAGTGCAGCGAA-CGGGAGT-TGTTG--AACGAAGCG-TA 7785 | |||||||| || |||||||| || | | | |||| ||||| ||| | | || Sbjct 37837 CAGGCCATGC-GCAAGGAAGAAATGTAAAGCCTCTAGAGTCTGTTGTAAACTAGCTGCTA 37779 Query 7786 TTGG--AAGATCAGACGA--CCAAAGTATCCG-TGAGCAGCAACGATGTTGTAGGTCTCT 7840 || ||||| | ||| |||||||| || || ||||| || |||||||| || ||| Sbjct 37778 CTGCGCAAGATTAAACGCACCCAAAGTAACCTATGTGCAGCTACAATGTTGTAAGTTTCT 37719 Query 7841 TCT-TCT-TGACCGAACTTA-TAACCATAGTTCTGGGACTCAGACTCAGTG-GTTTCACG 7896 ||| ||| || ||||| || ||||| || || || ||| ||| | |||||||| Sbjct 37718 TCTATCTCTGTCCGAATTTTGTAACCGTA-TTAACAGATTCAACTTCACTTCGTTTCACG 37660 Query 7897 AACCAGAGAAGAGGTTACAAGC-GAACCATGC-ATCGCACTGAACAGAGAACCACCAAAG 7954 | | | || |||| || ||||||||| || ||||||| | |||||| ||| Sbjct 37659 TATTAAACTTGAA-TTACTAGAAGAACCATGCGATAGCACTGATATAATAACCACGAAA- 37602 Query 7955 ACA-CCAGCGACGCCCAGCATG-TGGAAGG--GGTGCATCAGGATGTTGTGCTCT-GCTT 8009 ||| ||||| || || ||| ||||| ||||||| | | ||| || || |||| Sbjct 37601 ACATCCAGCAACACCAGCCATTATGGAATCCAGGTGCATTAAAA-GTTATGTTCGAGCTT 37543 Query 8010 --GGAAGACA-AGCATGTAGTTGAACG-TACCAGAG--ATGCCAAGAGGCATAGCGTCAG 8063 |||| || | |||| |||| || | ||||||| || ||| | ||||| |||||| Sbjct 37542 TTGGAAAACCGATCATGAAGTTAAATGCTACCAGAACAATACCATAAAGCATACCGTCAG 37483 Query 8064 -AGAAAGAACC-TTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAG-CAACTG 8120 ||||| ||| |||| | |||| || | || ||||| ||||| ||||| | | ||| Sbjct 37482 CAGAAACTACCATTGATCCGAAGGGTAAATTAG-AATACCGCAGA-GCTGCTGTCTACTT 37425 Query 8121 GAGCAGAGTATGCTAC-ACAGATCCAGGGACGCATACCT--AGACGGTAAGAAAG-TTCC 8176 || ||||| ||||||| | | ||| ||| |||||||||| | || ||| ||| |||| Sbjct 37424 GA-CAGAGAATGCTACGAAACATCAAGG-ACGCATACCTAAACACCGTAGCTAAGTTTCC 37367 Query 8177 CACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAA 8236 || ||||||||||| | | | ||| || | ||| ||||| | | | |||| || Sbjct 37366 CATTCACGACCCATCCAACAAGAAGCACCAATTAAGAAATGGAATACGATTAATTGGTAA 37307 Query 8237 GGACCACCGTT-GTAGAGCCACTC-ATCAAGAGAAGCTG---CTTCCCAGATG 8284 || ||||| || ||| | ||| || |||| ||||| | ||||||| ||| Sbjct 37306 GG-CCACCATTGGTATAACCATTCTTTCAACTGAAGCAGCCCCTTCCCAAATG 37255 >seq4353 Length=9576 Score = 86.0 bits (94), Expect = 8e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 177361 CGAGCGGGACTTGAACCCGCACGATCTTTACAATCAACAG-ATTTTAAGTCTGGTGTGTC 177419 || |||||||||||||||||||| ||||| || |||| |||||||||| | ||||| Sbjct 2896 CGGGCGGGACTTGAACCCGCACGGACTTTAAGGTCCACAGGATTTTAAGTCCTGCGTGTC 2837 Query 177420 TACCAATTCCACCACCG 177436 ||||||||||||||||| Sbjct 2836 TACCAATTCCACCACCG 2820 >seq3525 Length=15692 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 32022 AGGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTAT 32079 ||||||||||||| |||| || ||||||||||| ||||||||||||||||||||||| Sbjct 8125 AGGATTCGAACCTGGGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCTAT 8068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622021161784880