Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq185 131 2e-25 seq1406 98.7 1e-15 seq3056 86.0 8e-12 seq85 84.2 3e-11 >seq185 Length=475507 Score = 131 bits (144), Expect = 2e-25 Identities = 279/410 (68%), Gaps = 10/410 (2%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || || ||||| || |||||||| ||||||||||| ||||| || || ||||| || || Sbjct 208922 CGGTCGAAGCGCCCGGGGCGGAGCAGGGCGTCGTCGAGGATGTCGATACGGTTAGTGGCG 208863 Query 12762 GCGATGACAACGATGCCCG---TCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 || ||||| | | ||| | || || ||||||| |||||||| || | || Sbjct 208862 GCCATGACGATCACGCCAGGGTTCCCG---ACGAAGCCGTCCATCTCCACCAGCATCTGG 208806 Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGC-ACTGCGTTGCTTACC 12877 |||| ||| || || || || || || || | || | |||| | |||||| || Sbjct 208805 TTGAGGGTCTGCTCGCGCTCGTCGTT-GCCGCCAGCCATGCCGCTGCCACGTTGCCGGCC 208747 Query 12878 GACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAA 12937 |||||||| || ||||| ||||| | ||| ||||| || || || || || Sbjct 208746 AACGGCGTCGATCTCGTCGATGAAGATGATGCACGGCGAGTTCTCCTTCGCCTTGTCGAA 208687 Query 12938 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA 12997 | || ||||| | | |||||| || || || ||||||||||| || | || | | Sbjct 208686 CAAGTCGCGCACACGCGCGGCACCCACGCCGACGAACATCTCCACGAACTCGGACCCAG- 208628 Query 12998 ACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 13056 || | | ||||||||||||| | || || || | ||| || |||| ||| ||||| | Sbjct 208627 ACGTGGCGATGAAGGGGACGCCCGCCTCGCCGGCCACGGCCCGCGCGATGAGCGTCTTAC 208568 Query 13057 CCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106 | ||||| || || | || | | ||||| |||||| |||||||| Sbjct 208567 CGGTCCCGGGAGGACCTTCCAGGATCACGCCACGGGGGATCTTGGCACCA 208518 >seq1406 Length=118068 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 117071 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 117130 |||| || |||||||||| ||| ||| |||| | | || ||||||||||||| Sbjct 75278 TGAGCGTGTCGTAGATCCCGGAGATGCTGTCCTCCTTCATGGTGAGCAGGAAGCAGCTCG 75219 Query 117131 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 117190 |||| || ||| | || || || |||||||||||||| || || |||||| |||| | | Sbjct 75218 ACATCTGCGGCTTGGGGGTGCCGGCGTTGAAGAGGGTCGGCGTGGCGTGGGTGAAGAGCC 75159 Query 117191 CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGA 117250 |||||||| ||||| ||||| | ||| | |||| ||| ||| || || | Sbjct 75158 GCTGGGACATGAGGTCGTACGTCTCGATGACCTTGTCGATGTTCTCCTTGTGGATGCCCA 75099 Query 117251 TTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCA 117289 || || ||||| | ||||| || || | |||| || Sbjct 75098 CCGACACGCGCATGATCATGTGCTGCGGCCTCTCCACCA 75060 >seq3056 Length=22768 Score = 86.0 bits (94), Expect = 8e-12 Identities = 284/425 (67%), Gaps = 14/425 (3%) Strand=Plus/Plus Query 12680 GGGTAGGGACACGGTGATCTTACGA-TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAA 12738 ||| |||| |||| ||||| || || ||||| || |||||| ||| ||| ||| | Sbjct 9128 GGGGAGGGG-ACGGCGATCTGGCGCGTCGAAGCGGCCGCGGCGGACGAGTGCGG-GTCGA 9185 Query 12739 GGATATCAATGCG-GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATC-GAAGCC 12796 ||| || ||| ||| || || |||||||| | || ||| ||| | | | |||||| Sbjct 9186 GGACGTCGC-GCGCGTTGGTGGCGGCGATGACGATGACGCC-GTCGCCGGAGCCGAAGCC 9243 Query 12797 ATCCATCTCAGTCAAGAGTTGA-TTGATGGTTTGTTCACGTTCATCATTCGCGGGCAT-- 12853 |||||||| | | || | | |||| ||| || || ||||| || | | || | Sbjct 9244 GTCCATCTC-GACGAGGATGGCGTTGAGGGTCTGCTCGCGTTCGTCGTGCCCGCCCTGTG 9302 Query 12854 ACCACCCGCA-CTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACG 12912 | |||||| | ||| | ||||||||||| || || || | ||| | ||| |||| Sbjct 9303 AGAACCCGCCGCCGCGGCGGCGGCCGACGGCGTCGATCTCATCGAGGAAGATGATGCACG 9362 Query 12913 GTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAA 12972 | || || ||| | |||| || || || | ||| ||||| || || | Sbjct 9363 GGGCGTTGTCCTTGGCCTGCTTGAAGAGGTCGCGGACGCGGGAGGCGCCGACGCCGACGA 9422 Query 12973 ACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCG 13031 ||||||| || || | || | |||| || | || ||||||||||| || || || ||| Sbjct 9423 ACATCTCGACGAAGTCGGAGCCGGAG-ATGGAGAAGAAGGGGACGTCGGCCTCGCCGGCG 9481 Query 13032 ATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT 13091 || ||| |||||||||||| || || || || | ||| ||| ||| | || || Sbjct 9482 ATTGCTTTGGCGAGGAGGGTTTTGCCGCATCCGGGCTCGCCCATGAGGAGGACGCCGCGG 9541 Query 13092 GGGAT 13096 ||||| Sbjct 9542 GGGAT 9546 >seq85 Length=604401 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 116470 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 116529 || |||||||| || ||||| || || | ||| || || || ||||||| |||||| Sbjct 522783 TCGGTGTACTCGATGATTTCGGTGCAGAGATTGGACGATTTGATCGTGCCCAGGTTCTTC 522724 Query 116530 TGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 || || ||| |||| ||||| |||||| | ||||| || |||||||||||||| Sbjct 522723 TGGTTGCTCTTGCTGTTGCACGCGTCCTTGAAAAGCATGTACGGCGTCCCCGTCTC 522668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613404997369320