Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1406 105 1e-17 seq85 100 5e-16 >seq1406 Length=118068 Score = 105 bits (116), Expect = 1e-17 Identities = 140/192 (73%), Gaps = 7/192 (4%) Strand=Plus/Minus Query 203837 GTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTAC 203893 |||| |||||| |||||||| || |||| |||| |||| | | | || |||||| Sbjct 88267 GTCTGGTCCACGGTGAACTGGATAGCGT---CGGCCTTGGGCCGGGTCCGGAGGTAGTAC 88211 Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953 ||||||||||| |||||||||| |||| |||| | |||||| || ||||| |||| | | Sbjct 88210 ATGCCGGTCTTCAGGCCCTTCTTCCACGCGTAGAAGTGCATCGAGGACAGCTTGCCGAAG 88151 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCT 204013 | || |||||||| | ||||| ||||| ||| |||| | | | |||| || Sbjct 88150 GACGCCTCCGCCATGTGGACGTTCATCGACTGCGACTGGCAGATGTACGCCCCCCGGTCG 88091 Query 204014 GCGGCCATATTG 204025 || ||| ||||| Sbjct 88090 GCCGCC-TATTG 88080 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 204237 TGGTGAATGGTTCGAACGC-CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGC 204295 ||||||| || |||| ||| |||||||||||| || ||||| ||||| |||||||||| Sbjct 85480 TGGTGAAGGGCTCGA-CGCTCTCGTTGTTGCCCAAGATCTGCGCGGTCGAGGCCGTGGGC 85422 Query 204296 ATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAG 204355 ||||| |||| || |||||||| | || ||||| | | || ||| || Sbjct 85421 ATGGGCGCCACCAGGAGGGAGTTCCTCAGACCGTGCTCGGCCATTCTCGCCTTAAGGCCC 85362 Query 204356 GTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTG 204402 | |||||||||| | | |||| || || ||||| | ||||||||| Sbjct 85361 GCCCAGTCGTGCCTGTCGGTGGGCTTGACCCCCCAGAGGTCGAACTG 85315 >seq85 Length=604401 Score = 100 bits (110), Expect = 5e-16 Identities = 79/92 (86%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 204239 GTGAATGGTTCGAACGC-CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCAT 204297 ||||| || |||| ||| ||||||||| || |||||||||||||| |||||||||||| Sbjct 528393 GTGAAAGGCTCGA-CGCTCTCGTTGTTCCCCAAAATCTGAGCGGTCGAGGCCGTGGGCAT 528335 Query 204298 GGGAGCCAGGAGCAGGGAGTTGCGCACACCGT 204329 ||| ||||||||||| |||||||||| |||| Sbjct 528334 GGGGGCCAGGAGCAGCGAGTTGCGCATCCCGT 528303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795022737083120