Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3163 178 5e-39 >seq3163 Length=20664 Score = 178 bits (196), Expect = 5e-39 Identities = 265/364 (73%), Gaps = 14/364 (4%) Strand=Plus/Plus Query 451248 AAGAAATTTCATCTATGGTTCTT-ACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 |||||||||| | ||||| ||| | |||||||| |||| || ||| || | || | Sbjct 19221 AAGAAATTTCGGCAATGGTGCTTCAAAAAAATGAAGAAAACTGCTGAAGGATTTCTTAGG 19280 Query 451307 TCTCCAG-TTACTGATGCAGTAATTACT-GTTCCCGCTTATTTCAATGATGC-ACAACGG 451363 | || ||| || ||||||||||| || || || || || || ||||| |||||| Sbjct 19281 GCAAGAGGTTAAAGAAGCAGTAATTACAAGTACCTGCATACTTTAACGATGCCACAACG- 19339 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 ||||| |||||||| ||||| | ||||||| |||| | ||| || ||||| || || Sbjct 19340 CAAGCTACTAAAGAAGCAGGTGAAATTGCTG-TTTAGAGGTTAAACGTATTATAAACGAG 19398 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT 451483 ||||| || ||||| ||||| || ||||||| ||| |||| | |||||| || Sbjct 19399 CCTACTGC-GCTGCCCTAGCCTACGGACTAGACAAAC---AAGACA---AAGAAATGAAA 19451 Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAA-CTCATGATACTTCTGTACTTTCAATTGAAGA 451542 || |||| ||||| | |||||| |||| | ||||| |||||||||| | | || Sbjct 19452 ATCGTAGTGTTTGACTGTGGTGGTGGAAACACATGACGTTTCTGTACTTGAGTTGGGCGA 19511 Query 451543 TGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 ||| || ||||||||||| | ||| |||||||||| || |||| ||||| || |||| Sbjct 19512 TGGTGTTTTTGAAGTAAAATCTACCGATGGTGATACACACTTAGGTGGTGATGACTTTGA 19571 Query 451603 TAAT 451606 |||| Sbjct 19572 TAAT 19575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975381041761316