Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3163 118 8e-21 >seq3163 Length=20664 Score = 118 bits (130), Expect = 8e-21 Identities = 260/375 (69%), Gaps = 15/375 (4%) Strand=Plus/Minus Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 ||||||||| || ||||| || || | |||| || |||| | |||||| |||| Sbjct 19575 ATTATCAAAGTCATCACCACCTAAGTGTGTATCACCATCGGTAGATTTTACTTCAAAAAC 19516 Query 518083 TCCATCTTCAAGAGACAAA-AGAGTTACATCATGGGTT-CCACCACCCATATCAAAAATA 518140 ||||| | | | ||| | || || ||||| ||| |||||||| ||||| | Sbjct 19515 ACCATCGCCCA-ACTCAAGTACAGAAACGTCATGTGTTTCCACCACCACAGTCAAACACT 19457 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 | | ||||||||||||||||| ||| || || || || || | ||||| ||||| Sbjct 19456 ACGATTTTCATTTCTTTGTCTTG---TTTGTCTAGTCCGTAGGCTAGGGCAGC-GCAGTA 19401 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || ||||| | ||| | | | |||||||| ||||| |||||||| ||| Sbjct 19400 GGCTCGTTTATAATACGTTTAACCTCTA-AACAGCAATTTCACCTGCTTCTTTAGTAGCT 19342 Query 518261 TGTCTTTGT-GAATCGTTAAAATATGCAGGAAC-AGTAATAACGGCATCAGTTACTTCTT 518318 || | |||| | ||||||||| |||||||| || ||||| || || || | || |||| Sbjct 19341 TG-CGTTGTGGCATCGTTAAAGTATGCAGGTACTTGTAATTACTGCTTCTTTAACCTCTT 19283 Query 518319 TACCAATATAAGCGCTT--GCCGTTTGTTTCATTTTACTTAA-AATCATTGATGAAATTT 518375 || | | || ||| || |||| |||||||| | || | ||||| ||||||| Sbjct 19282 GCCCTA-AGAAATCCTTCAGCAGTTTTCTTCATTTTTTTGAAGCACCATTGCCGAAATTT 19224 Query 518376 GTTCTGGGGAATATT 518390 || ||| | ||||| Sbjct 19223 CTTGTGGTGTATATT 19209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780161070360862