Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq260 154 2e-32 seq1397 150 2e-31 seq319 87.8 2e-12 >seq260 Length=407146 Score = 154 bits (170), Expect = 2e-32 Identities = 160/209 (77%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| |||||||| || || || || ||||| ||| |||||| || |||||||| Sbjct 18653 CCGATCAGACGCTTCGCGTCGAAGACCGTGTTGGTGGCGTTCATCGCCACCTGGTTCTTG 18594 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||| ||||| ||||| || | | | || || ||||||||||| || || || Sbjct 18593 GCAGCGTCACCGATGAGACGCTCGGTCT---CGGTGAAGGCGACGTACGAGGGCGTGGTA 18537 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || ||||||||||| || || ||||||||||| ||||||||||| || |||||| Sbjct 18536 CGGTTGCCCTGGTCGTTCGCGATGATCTCTACGCGGTCATTTTGCCAGACACCCACGCAC 18477 Query 8117 GAATACGTTGTTCCTAAATCAATACCGAT 8145 || ||||| || || | || || ||||| Sbjct 18476 GAGTACGTCGTACCCAGGTCGATCCCGAT 18448 Score = 147 bits (162), Expect = 3e-30 Identities = 201/280 (72%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||||||| || || |||||||| || || || || ||||| || Sbjct 20381 TCGAAGTCCTCGCCGCCCAAGTGGGTGTCACCCGCGGTGGCCTTCACCTCGAAGATGCCC 20322 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || ||| ||||| || || || || |||||||| || ||||| ||| Sbjct 20321 TCCTCGATGGTCAGCACCGACACATCGAAAGTCCCGCCTCCCAGGTCGAAGATGAGCACG 20262 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || || | || ||| || || |||||||||||||| || || || || || Sbjct 20261 TTGCGCTCCTCACCCTT---CTTGTCCAGGCCGTACGCGATAGCGGCGGCGGTGGGCTCG 20205 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || | ||| ||||| | || | | |||| || || ||||| ||||| Sbjct 20204 TTGATGATTCGCATCACGTTAAGGCCGGAGATCGCTCCCGCGTCCTTGGTCGCCTGTCGC 20145 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 ||||| ||||| ||||| || || || || | ||||||| Sbjct 20144 TGCGAGTCGTTGAAGTACGCGGGCACGGTGATCACCGCGT 20105 Score = 143 bits (158), Expect = 3e-29 Identities = 274/398 (69%), Gaps = 7/398 (2%) Strand=Plus/Plus Query 7735 GTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCA 7793 |||| | || | ||| || || || | |||||||| || ||||| ||| |||| ||| Sbjct 16894 GTCCCTTACCTCCTTGCCCAGGTAAGCCTCCGCGATCTCCTTCATCTTTACCAAGA-CCA 16952 Query 7794 TCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAA-ATCAACTTCAATC 7852 | || || ||||| || | ||| ||||| ||| | || || || || |||| || | || Sbjct 16953 TGGACGAGATCTCCTCGGGCGCGAACTGCTTCCTCTCCCCCTTGAACATCACCT-CGATG 17011 Query 7853 ATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGG 7912 |||| || || | | || || ||||||| | | ||| | ||| | ||| Sbjct 17012 GTGGGCTTGCCCCCGTCCCCCTCGACAACCTTAAAGGGCCAGTGCTTCCTGTCGGAGGCC 17071 Query 7913 ACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTG 7972 || |||| | | ||||| |||||||| || || || |||||||| | Sbjct 17072 ACGGCCGGGTCGCTGTAGCGGCGACCGATCAGACGCTTGGCGTCGAAGACTGTGTTGGTT 17131 Query 7973 GGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTA 8032 | |||||| || |||||||| ||||| || ||||| ||||| ||| | | | || Sbjct 17132 GCGTTCATTGCCACCTGGTTCTTGGCCGCATCGCCGATGAGACGCTCAGTCT---CGGTG 17188 Query 8033 AACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGG 8092 || |||||||| || || || || || || || ||||||||||| || || || |||||| Sbjct 17189 AAGGCGACGTAAGAGGGCGTAGTGCGGTTGCCCTGGTCGTTCGCGATGATCTCCACGCGG 17248 Query 8093 TCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 || || ||||| || || |||||||| ||||| || || Sbjct 17249 TCATTCTGCCACACCCCCACGCACGAGTACGTCGTGCC 17286 Score = 141 bits (156), Expect = 1e-28 Identities = 201/281 (72%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||||||| || || |||||||| || || || || ||||| || Sbjct 15291 TCGAAGTCCTCGCCGCCCAAGTGGGTGTCACCCGCGGTGGCCTTCACCTCGAAGATGCCC 15350 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || ||| ||||| || || || || || || || || ||||| ||| Sbjct 15351 TCCTCGATGGTCAGCACCGACACATCGAAAGTCCCGCCCCCGAGATCGAAGATGAGGACG 15410 Query 7577 TT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || ||| || || ||||| || || |||||||||||||| || || || || || Sbjct 15411 TTGCGT----TCCTCACCCTTCTTGTCTAGGCCGTACGCGATAGCGGCGGCGGTGGGCTC 15466 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || || | ||| ||||| | || | | |||| || || ||||| ||||| Sbjct 15467 GTTGATGATTCGCATCACGTTAAGGCCGGAGATCGCTCCCGCGTCCTTGGTCGCCTGTCG 15526 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 ||||| ||||| ||||| || || || || | ||||||| Sbjct 15527 CTGCGAGTCGTTGAAGTACGCGGGCACGGTGATCACCGCGT 15567 >seq1397 Length=118552 Score = 150 bits (166), Expect = 2e-31 Identities = 150/194 (77%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 |||||||| ||||| || || || |||||||| | | |||||| || |||||||| Sbjct 3873 CCGATAAGCCGCTTGGCGTCGAAGACTGTGTTGGTTGCGTTCATTGCCACCTGGTTCTTG 3814 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 |||||||| ||||| ||||| || | | | || || ||||||||||| || || || Sbjct 3813 GCCGCGTCGCCGATGAGACGCTCGGTGT---CGGTGAAGGCGACGTACGAGGGCGTGGTG 3757 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 || || || ||||||||||| || || || |||||||| || ||||||||||| |||||| Sbjct 3756 CGGTTGCCCTGGTCGTTCGCGATGATCTCCACGCGGTCATTCTGCCAGACGCCCACGCAC 3697 Query 8117 GAATACGTTGTTCC 8130 || ||||| || || Sbjct 3696 GAGTACGTCGTGCC 3683 Score = 134 bits (148), Expect = 2e-26 Identities = 199/280 (71%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||||||| || || |||||||| || || || || ||||| || Sbjct 9336 TCGAAGTCCTCGCCGCCCAAGTGGGTGTCACCCGCGGTGGCCTTCACCTCGAAGATGCCC 9277 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | || ||| ||||| || || || || || ||||| || ||||| ||| Sbjct 9276 TCCTCGATGGCCAGCACCGACACATCGAAAGTCCCGCCCCCGAGGTCGAAGATGAGGACG 9217 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || ||| | | ||| || || |||||||||||||| || || || || || Sbjct 9216 TTGCGCTCCTCGCCCTC--TCTG-TCCAGGCCGTACGCGATAGCGGCGGCGGTGGGCTCG 9160 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || | ||| ||||| | |||| | |||| || || ||||| ||||| Sbjct 9159 TTGATGATTCGCATCACGTTAAGGCCGGAGATAGCTCCCGCGTCCTTGGTCGCCTGTCGC 9100 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 || || ||||| ||||| || || || || | ||||||| Sbjct 9099 TGAGAGTCGTTGAAGTACGCGGGCACGGTGATCACCGCGT 9060 >seq319 Length=370087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 131789 GTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGGTTCAAA 131848 ||||||||||||||||||||||||| || |||| |||||||| ||||||| |||||||| Sbjct 244852 GTGGCCGAGTGGTCTAAGGCGCCAGTTTTAGGCACTGGTTCGAAAGAGCGTGGGTTCAAA 244793 Query 131849 TCC 131851 ||| Sbjct 244792 TCC 244790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635026994814680