Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq185 98.7 1e-15 seq565 91.5 2e-13 >seq185 Length=475507 Score = 98.7 bits (108), Expect = 1e-15 Identities = 320/483 (66%), Gaps = 18/483 (4%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || || ||||| || ||||| || || ||||| || ||||| || | || || || ||| Sbjct 208922 CGGTCGAAGCGCCCGGGGCGGAGCAGGGCGTCGTCGAGGATGTCGATACGGTTAGTGGCG 208863 Query 15945 GCGATGACAACAATACCTGT-TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || ||||| | | || | ||| | | || || |||||||| || | |||||| Sbjct 208862 GCCATGACGATCACGCCAGGGTTCCCGA-CGAAGCCGTCCATCTCCACCAGCATCTGGTT 208804 Query 16004 AATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGTTGCTTTCC 16060 | || || || || || || || ||| || || || | ||| ||||| || Sbjct 208803 GAGGGTCTGCTCGCGCTCGTCGTTGCCGCCAGCCATGCCGCTGCCAC---GTTGCCGGCC 208747 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTT--CA 16118 ||||| || ||||| || ||||||| |||||| || || || | | || ||| | Sbjct 208746 AACGGCGTCGATCTCGTCGATGAAGATGATGCACGGC-GAGTT-CTCCTTCGCCTTGTCG 208689 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || | || || |||||| ||| ||||| || || ||||||||||| || | | | Sbjct 208688 AACAAGTCGCGCACACGCGCGGCACCCACGCCGACGAACATCTCCACGAACTCGGACCCA 208629 Query 16179 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 || | | | |||||||||||| | || || || | ||| || |||| || ||||| Sbjct 208628 GA-CGTGGCGATGAAGGGGACGCCCGCCTCGCCGGCCACGGCCCGCGCGATGAGCGTCTT 208570 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA--CTTCCA 16295 ||| || || || ||| | |||| | || || || |||||||| ||| ||| Sbjct 208569 ACCGGTCCCGGGAGGACCTTCCAGGATCACGCCACGGGGGATCTTGGCACCAACCTT--G 208512 Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCG 16355 ||| | || || | ||| || || ||||| | ||| |||| || ||||| ||| Sbjct 208511 GTGTACTTATCGGGGTTCTTGAGGAAGTCCACCACCTCCTCCAGCTCGAACTTGGCTGCG 208452 Query 16356 TCA 16358 ||| Sbjct 208451 TCA 208449 >seq565 Length=272304 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 158485 ACTTCTCCAAACTTTCGTTGCTTGTAATCTCCATCAAGACCTGCCATGATGACTGATTT- 158543 ||||| |||||||| | ||| |||| |||||||||| | || || |||||||| Sbjct 250465 ACTTCCCCAAACTTACATTGAGAAAAATCGGCATCAAGACCGGACAAAATTACTGATTTA 250406 Query 158544 -TTTAAGGAAGAGACACATTTGTACAAATTCTTGAAGGTTTGAGAAAAACTGTGCTTCAT 158602 ||||| | ||| | |||| ||||||| |||||| |||| |||||| || || |||| Sbjct 250405 TTTTAATGTAGACAGT-ATTT-TACAAATCGTTGAAGTTTTGTGAAAAATTGAGCCTCAT 250348 Query 158603 CTATAGCTACGATATC 158618 |||| ||||||||||| Sbjct 250347 CTATCGCTACGATATC 250332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620638992075440