Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq185 187 3e-42 seq436 87.8 2e-12 seq3056 82.4 9e-11 >seq185 Length=475507 Score = 187 bits (206), Expect = 3e-42 Identities = 331/478 (69%), Gaps = 10/478 (2%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || || || || || |||| |||||| || ||| Sbjct 208922 CGGTCGAAGCGCCCGGGGCGGAGCAGGGCGTCGTCGAGGATGTCGATACGGTTAGTGGCG 208863 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| | | ||||| | | |||| |||||||| || || | ||||||| Sbjct 208862 GCCATGACGATCACGCCAGGGTTCCCGACGAAGCCGTCCATCTCCACCAGCATCTGGTTG 208803 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAG---GGCATACCACCTGCCGAACGCTTCTTACCG 11679 | ||||| || ||||| |||||| | | ||| || | |||| ||| | | || Sbjct 208802 AGGGTCTGCTCGCGCTCGTCGTTGCCGCCAGCCATGCCGC-TGCC--ACGTTGCCGGCCA 208746 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || ||||| ||||| |||||||| | ||| ||||| ||| | |||| ||||| Sbjct 208745 ACGGCGTCGATCTCGTCGATGAAGATGATGCACGGCGAGTTCTCCTTCGCCTTGTCGAAC 208686 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 | || || |||||| || || || || ||||||||||| ||||| | | |||| Sbjct 208685 AAGTCGCGCACACGCGCGGCACCCACGCCGACGAACATCTCCACGAACTCGGACCCAGAC 208626 Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 |||||||| || | ||| || || | ||| || |||| ||| |||||||| Sbjct 208625 GTGGCGATGAAGGGGACGCCCGCCTCGCCGGCCACGGCCCGCGCGATGAGCGTCTTACCG 208566 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA--CTTCCAAAGT 11917 || || || | ||| | || | ||||||||||||||||||||||| ||| || Sbjct 208565 GTCCCGGGAGGACCTTCCAGGATCACGCCACGGGGGATCTTGGCACCAACCTT--GGTGT 208508 Query 11918 AGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTC 11975 | || || ||||||||||||||||| | |||||| || || |||||| | ||| Sbjct 208507 ACTTATCGGGGTTCTTGAGGAAGTCCACCACCTCCTCCAGCTCGAACTTGGCTGCGTC 208450 >seq436 Length=314818 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 119510 AAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCT 119569 ||||||| | || || ||||||||| || |||||||| || || ||||||||||| | Sbjct 92595 AAGCCCT-CGTCGCGGCTGATGAGCTCGTTGCTGAAGCACAGCCCCGGCATGAGTCCCCG 92537 Query 119570 TTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCT 119619 ||||| ||||| || | ||| || || ||||| |||||||| || |||| Sbjct 92536 CTTCTTCAGCCAGAACACGGCGCAGAAGCTTCCCGAAAAGAAAATACCCT 92487 >seq3056 Length=22768 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 ||||| ||||| |||||||||| ||| | ||| ||||| |||| | ||||| | | Sbjct 9326 CCGACGGCGTCGATCTCATCGAGGAAGATGATGCACGGGGCGTTGTCCTTGGCCTGCTTG 9385 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || || || || || || || || || || ||||||||||| |||||| | | || Sbjct 9386 AAGAGGTCGCGGACGCGGGAGGCGCCGACGCCGACGAACATCTCGACGAAG-TCGGAGCC 9444 Query 11797 GAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 | | | || | |||||| || | | ||| || ||||| ||| |||||||| || || Sbjct 9445 GGAGATGGAGAAGAAGGGGACGTCGGCCTCGCCGGCGATTGCTTTGGCGAGGAGGGTTTT 9504 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGAT 11897 || || || | || ||| ||| |||| |||||||| Sbjct 9505 GCCGCATCCGGGCTCGCCCATGAGGAGGACGCCGCGGGGGAT 9546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588877883960600