Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_015250.1 Length=159801 Score E Sequences producing significant alignments: (Bits) Value seq6597 104 2e-17 seq3998 87.8 2e-12 seq3550 86.0 6e-12 seq3347 82.4 8e-11 >seq6597 Length=2484 Score = 104 bits (114), Expect = 2e-17 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 69733 ATTAATCTGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGC 69792 ||| || ||||||||||| ||||||||||||||| ||||| ||||||||||||| |||| Sbjct 1966 ATTTATATGGTGGGCCCACCAGGACTCGAACCTGGGACCAAGGGATTATGAGTCCCCTGC 1907 Query 69793 TCT-GCCAATTGAGCTATAGGCCC 69815 ||| |||| |||||||||||||| Sbjct 1906 TCTAACCAACTGAGCTATAGGCCC 1883 >seq3998 Length=11755 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 69740 TGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCT-GCC 69798 ||||||||||| | ||||||||||| | ||||| ||||||||||||| ||||||| || Sbjct 1853 TGGTGGGCCCACCTGGACTCGAACCAGGGACCAAAGGATTATGAGTCCTCTGCTCTAACC 1912 Query 69799 AATTGAGCTATAG-GCCCTT 69817 || |||||||||| |||||| Sbjct 1913 AACTGAGCTATAGTGCCCTT 1932 >seq3550 Length=15385 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 69747 CCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCTGCCAATTGAGC 69806 |||| |||||| |||||| |||| || ||||| ||||| | ||||||||||||||||| Sbjct 3838 CCCACAAGGACTTGAACCTTGAACCTACTGATTAAGAGTCAGTTGCTCTGCCAATTGAGC 3779 Query 69807 TATAGGCCCTTGTTTTATAACAAGTTATTATT 69838 |||||| ||| | || |||| |||||| || Sbjct 3778 TATAGGGGCTTCTGTTTTAACTCGTTATTGTT 3747 >seq3347 Length=17785 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 69740 TGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCTG-CC 69798 |||||||||||| |||||| |||||| ||||| ||||||||||| |||||||| || Sbjct 339 TGGTGGGCCCAGTAGGACTTGAACCTACGACCAATCGATTATGAGTCGACTGCTCTGACC 280 Query 69799 AATTGAGCTATAGGCCC 69815 || |||||||| ||||| Sbjct 279 AACTGAGCTATGGGCCC 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511150034606120