Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq4604 89.7 8e-13 seq4750 84.2 3e-11 >seq4604 Length=8381 Score = 89.7 bits (98), Expect = 8e-13 Identities = 71/85 (84%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 113820 GGGGGATTAGCTCAGTTGGAATGAGCGACTGGTTTGCAACCAGTAGGTCATCGGTTCGAC 113879 ||||||||||||||| ||| ||||| ||| ||||| ||| |||||||||||||||| Sbjct 4064 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 4123 Query 113880 CCCGATATCCTCCACCAATTTTAAT 113904 |||||||||||||| ||||||| Sbjct 4124 TCCGATATCCTCCAC---TTTTAAT 4145 >seq4750 Length=7679 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 113819 TGGGGGATTAGCTCAGTTGGAATGAGCGACTGGTTTGCAACCAGTAGGTCATCGGTTCGA 113878 ||||| |||||||||| ||| ||||| ||| ||||| ||| ||||||||||||||| Sbjct 5230 TGGGGAATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGA 5289 Query 113879 CCCCGATATCCTCCACCAATTTTA 113902 | ||||||| |||||| ||| ||| Sbjct 5290 CTCCGATATTCTCCACAAATGTTA 5313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752479425447880