Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq2386 125 1e-23 >seq2386 Length=46605 Score = 125 bits (138), Expect = 1e-23 Identities = 468/679 (69%), Gaps = 55/679 (8%) Strand=Plus/Plus Query 215531 ATCTGGGAAG---CAGCAACAGTTGAC-GAATGGCTCTAC-AATGGTGGACCTTTCCAAC 215585 || ||||||| | || ||||||| |||||| | ||| |||||||| |||| |||| Sbjct 37256 ATTTGGGAAGGGGCTGCTTCAGTTGAAAGAATGGTTATACCAATGGTGG-CCTTACCAAT 37314 Query 215586 TGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAA-CTT 215644 | | | ||||| ||| | |||||| |||| | || | | |||||| ||| Sbjct 37315 TAATCGTATTCCATTTCTTAATTGGTGCTTCTTGTTGGATGGGTCGTGAATGGGAAACTT 37374 Query 215645 TCTTACAGA--TTAGGTATGAGACCTTGGATCTGT-GTTGCTTACTCCGCACCTGTAT-C 215700 ||| | ||||||||| | ||||| || | | || || | ||| | | ||| | Sbjct 37375 AGCTACGGTGTTTAGGTATGCGTCCTTG-ATGTTTCGTAGCATTCTCTGT-CAAGTAGAC 37432 Query 215701 TGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGG-TCAG-GGTTCTTTCT-CTGATGC 215757 || || | ||| |||||| | | || || ||||| ||| ||| ||||| |||| | Sbjct 37433 AGCAGC-TCTGCGGTATTC-TAATTTACCC-TTCGGATCAATGGTAGTTTCTGCTGACGG 37489 Query 215758 TATGCCACTTGGAATC--TCTGGAA-CATTCAACTACATGTTTG-TTTTCCAG--GCT-G 215810 ||||| ||| || ||||| | |||| |||| |||| | | ||||||| ||| | Sbjct 37490 TATGCTTTATGGTATTGTTCTGGTAGCATTTAACTTCATGATCGGTTTTCCAAAAGCTCG 37549 Query 215811 AGCACAACATTCTGATGCACCC--ATTCCACA-TGTTAGGTGTGGCTGG-TGTCTTCGGT 215866 | || ||| || | ||||||| |||||| | || ||||| ||||| ||| |||| | Sbjct 37550 AACATAACTTT-TAATGCACCTGGATTCCATAATGGCTGGTGTTGCTGGATGTTTTCG-T 37607 Query 215867 GGTTCATTGT-TCTCTGCAAT-GCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGA 215924 |||| ||| | || ||| || ||| ||||| | || || | |||| | || | Sbjct 37608 GGTT-ATTATATCAGTGCTATCGCATGGTTCTTCTAGTAATTCAAGTTTAATACGTGAAA 37666 Query 215925 C-AACTGAGCAAGAATCTCAGAACTACGGTTACAAG-TTCGGACA-AGAG-GAGGAAACA 215980 | || ||| |||||| || ||||||||||| |||||||| ||| || ||||| Sbjct 37667 CGAAGTGAAGTTGAATCTGTTAA-TACGGTTACAAAATTCGGACAGAGATAGAAGAAACT 37725 Query 215981 TACAACATCGTAGCTGCACA-CGGTTACTTTGG--TCGCCTCATCTT--CCAATACGCAT 216035 |||||||| ||||||||||| ||||||||||| || | ||||| || || ||| Sbjct 37726 TACAACATTGTAGCTGCACATAGGTTACTTTGGGTGCGTTTAATCTTGCGCAGTA-GCAG 37784 Query 216036 C----TTTCAACA-ACTCAAGAAG-TCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTT 216089 | || ||||| |||| ||| | | | || ||||||||||| |||| |||| || Sbjct 37785 CTAGTTTACAACAGACTCTAGAGGCTTTACATTTCTTCCTTGC-GCATGGCCTGAAGTTG 37843 Query 216090 GTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACT 216149 | || ||| ||| || | ||||| | |||||||| || ||| | || ||||| | || Sbjct 37844 GGATTTGGTTAACAGCTTTAGGTGT-TGTACTATGGCATTTAACTTAAATGGTTT-AGCT 37901 Query 216150 TCAACCAGTCTGTCGTAGA 216168 | ||||||||||| ||||| Sbjct 37902 TTAACCAGTCTGTTGTAGA 37920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744957478718960