Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharina_20japonica_20[genbank_20GCA_5F000978595.1_202015-04-22] 13,327 sequences; 543,425,876 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq194 125 2e-23 seq76 125 2e-23 >seq194 Length=468613 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || || || ||||| || | || || | || || || Sbjct 408053 ACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCGTCCTCC 408112 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 408113 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 408172 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| ||| || || |||||||| ||| || || | ||| | |||||| Sbjct 408173 ATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGTTCGACGTCCAAGGTGATCGTCTTA 408232 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 408233 CCCGTGAGGGTCTTGACGAAGATCTGCAT 408261 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| || | || || | || || || Sbjct 403331 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCGTCCTCC 403390 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || ||||| || ||||| || Sbjct 403391 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGTGGGATGCCCTCCTTGTCCTGG 403450 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| ||| || || |||||||| ||| || || | ||| | |||||| Sbjct 403451 ATCTTCTGCTTCACGCCGTCGATAGTGTCCGAGGGTTCGACATCCAAGGTGATCGTCTTA 403510 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 403511 CCCGTGAGGGTCTTGACGAAGATCTGCAT 403539 >seq76 Length=624063 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| || | || || | || || || Sbjct 332946 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCA 332887 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || ||||| || || ||||| || |||||||| Sbjct 332886 AGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCTTGG 332827 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| ||| || ||||||||||| |||||| || | ||| | ||||| Sbjct 332826 ATCTTCTGCTTCACGCCGTCGATGGTGTCCGATGGTTCCACGTCCAAGGTGATTGTCTTA 332767 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 332766 CCCGTGAGGGTCTTGACGAAGATCTGCAT 332738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109292153589809